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BaseInfo

ncRNA ID	novel_gar_miR701
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr2:69964806-69965000 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029588;SRR1029587
Length	24
Mature sequence(if miRNA)	172 - UAGAGGGGGCAAAAUGCAAUCUGA - 195
Stem-loop(if miRNA)	--     A                  A        A  C    U          C    A        CAAAA    C       AACAG       GG   AGAUU CAUUUUGCCUUUUUUACU AAAAAAAU GG AAAU AGUUUCUGUA GUUA AUAAAGAG     AGAC AGUUUUU     UAAAAAU  A   ||||| |||||||||||||||||| |||||||| || |||| |||||||||| |||| ||||||||     |||| |||||||     |||||||  U   UCUAA GUAAAACGGGGGAGAUGA UUUUUUUA CC UUUA UCAGAGAUAU CAAU UAUUUUUU     UUUG UCGGGAA     AUUUUUA  A AG     C                  G        C  A    C          A    C        ---UG    A       -GACA       AG
Stem-loop sequence	AGAUUACAUUUUGCCUUUUUUACUAAAAAAAAUAGGCAAAUUAGUUUCUGUACGUUAAAUAAAGAGCAAAAAGACCAGUUUUUAACAGUAAAAAUGGAUAGAAUUUUUAACAGAAGGGCUAGUUUGUUUUUUUAUCUAACAUAUAGAGACUCAUUUACCCAUUUUUUUGAGUAGAGGGGGCAAAAUGCAAUCUGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017752799.1	ncRNA:24   AGUCUAACGUAAAACGGGGGAGAU   1   |=|||||||||||||||||||||| targets:1945   UUAGAUUGCAUUUUGCCCCCUCUA   1968 Target Full Sequence	0.0	PREDICTED: Gossypium arboreum uncharacterized LOC108454360 (LOC108454360), transcript variant X2, mRNA	uncharacterized LOC108454360(LOC108454360)	coding protein	psRNATarget
XM_017752798.1	ncRNA:24   AGUCUAACGUAAAACGGGGGAGAU   1   |=|||||||||||||||||||||| targets:1954   UUAGAUUGCAUUUUGCCCCCUCUA   1977 Target Full Sequence	0.0	PREDICTED: Gossypium arboreum uncharacterized LOC108454360 (LOC108454360), transcript variant X1, mRNA	uncharacterized LOC108454360(LOC108454360)	coding protein	psRNATarget
XM_017768432.1	ncRNA:24   AGUCUAACGUAAAACGGGGGAGAU   1   ||=*|||||||||||||||||||= targets:2451   UCGAAUUGCAUUUUGCCCCCUCUG   2474 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum tetratricopeptide repeat protein 7A-like (LOC108467698), transcript variant X2, mRNA	tetratricopeptide repeat protein 7A-like(LOC108467698)	coding protein	psRNATarget
XM_017768430.1	ncRNA:24   AGUCUAACGUAAAACGGGGGAGAU   1   ||=*|||||||||||||||||||= targets:2706   UCGAAUUGCAUUUUGCCCCCUCUG   2729 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum tetratricopeptide repeat protein 7A-like (LOC108467698), transcript variant X1, mRNA	tetratricopeptide repeat protein 7A-like(LOC108467698)	coding protein	psRNATarget
XM_017776106.1	ncRNA:24   AGUCUAACGUAAAACGGGGGAGAU   1   ||-||||||||||||||||*|||| targets:602   UC-GAUUGCAUUUUGCCCCAUCUA   624 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum serine/threonine-protein kinase D6PKL1 (LOC108474182), transcript variant X2, mRNA	serine/threonine-protein kinase D6PKL1(LOC108474182)	coding protein	psRNATarget