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BaseInfo

ncRNA ID novel_gar_miR687
Species Gossypium arboreum
Class miRNA
Genome position Chr2:29644107-29644177 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029588
Length 21
Mature sequence(if miRNA) 51 - UGACAUGGCAAAAGCGCUCCU - 71
Stem-loop(if miRNA) --          U        ---AU        CCA
  GAGUGCUUUU CCAUGUCA     AAGCGUGU   C
  |||||||||| ||||||||     ||||||||
  CUCGCGAAAA GGUACAGU     UUUGCGCG   G
UC          C        CGUAU        ACU
Stem-loop sequence GAGUGCUUUUUCCAUGUCAAUAAGCGUGUCCACGUCAGCGCGUUUUAUGCUGACAUGGCAAAAGCGCUCCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017774937.1
ncRNA:21   UCCUCGCGAAAACGGUACAGU   1
  *****||||||||||||||||
targets:1496   UUCUUCGCUUUUGCCAUGUCA   1516

3.0 PREDICTED: Gossypium arboreum ABC transporter G family member 20-like (LOC108473402), mRNA ABC transporter G family member 20-like(LOC108473402) coding protein psRNATarget