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BaseInfo

ncRNA ID novel_gar_miR655
Species Gossypium arboreum
Class miRNA
Genome position Chr1:47736172-47736283 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029588
Length 24
Mature sequence(if miRNA) 89 - AUUGUUGGUCUGACGGUCAAACUG - 112
Stem-loop(if miRNA) --   CA       A           A    UC     UAAAUAUAAAACCAGUUUU
  GUU  ACCGUCA ACCAAUAAUAA UAAA  AAAAU                   G
  |||  ||||||| ||||||||||| ||||  |||||
  CAA  UGGCAGU UGGUUGUUAUU AUUU  UUAAA                   U
GU   AC       C           A    --     UAUUUUUAAAUUUUUAGUU
Stem-loop sequence GUUCAACCGUCAAACCAAUAAUAAAUAAAUCAAAAUUAAAUAUAAAACCAGUUUUGUUUGAUUUUUAAAUUUUUAUAAAUUUUUAAUUAUUGUUGGUCUGACGGUCAAACUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017777616.1
ncRNA:24   GUC----AAACUGGCAGUCUGGUUGUUA   1
  |=|----||*||=|*|||||||||||||
targets:837   CGGCUGCUUGGAUCUUCAGACCAACAAU   864

3.0 PREDICTED: Gossypium arboreum transcription factor MYB108 (LOC108475633), mRNA transcription factor MYB108(LOC108475633) coding protein psRNATarget