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BaseInfo

ncRNA ID ath-miRf11006-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 21
Mature sequence(if miRNA) NA - UACUCGAUCAUGGGGUCGAGU - NA
Stem-loop(if miRNA)    UG   G         AUGG          -UG  G AAA
UCG  GGG UACUCGAUC    GGUCGAGUGG   AC U   G
|||  ||| |||||||||    ||||||||||   || |   U
AGU  UCU GUGAGCUGG    UCAGCUCAUC   UG A   G
   UG   G         GGGA          UUA  G GUA
Stem-loop sequence UCGUGGGGGUACUCGAUCAUGGGGUCGAGUGGUGACGUAAAGUGAUGAGGUAUUCUACUCGACUAGGGGGUCGAGUGGUCUGUUGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AY231407.1
ncRNA:21   UGAGCUGGGGUACUAGCUCAU   1
  |||||||||||||=|||||||
targets:537   ACUCGACCCCAUGGUCGAGUA   557

1.5 Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds NA coding protein psRNATarget
AK230036.1
ncRNA:21   UGAGCUGGGGUACUAGCUCAU   1
  |||||||||*|||||||||||
targets:962   ACUCGACCCAAUGAUCGAGUA   982

1.5 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL22-60-F14 NA coding protein psRNATarget
BX824689.1
ncRNA:21   UGAGCUGGGGUACUAGCUCAU   1
  ==||*||||*|||||||||||
targets:83   GUUCAACCCAAUGAUCGAGUA   103

2.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH64ZF05 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget