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BaseInfo

ncRNA ID novel_gar_miR646
Species Gossypium arboreum
Class miRNA
Genome position Chr12:142095016-142095109 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029586
Length 23
Mature sequence(if miRNA) 72 - AGAAAGCUCUUGAAUGUUCGGUU - 94
Stem-loop(if miRNA) --    -     U     G     UUA   GGGGAAGAAAAUUGAAGG
  AGAA AGCUC UGAAU UUCGG   CUU                  U
  |||| ||||| ||||| |||||   |||                  A
  UCUU UUGAG ACUUG GAGUU   AUU                  A
GU    C     U     -     -UU   UUCGUUUGAUGGUACUUG
Stem-loop sequence AGAAAGCUCUUGAAUGUUCGGUUACUUGGGGAAGAAAAUUGAAGGUAAGUUCAUGGUAGUUUGCUUUUAUUUUGAGGUUCAUGAGUUCUUCUUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017788392.1
ncRNA:23   UUGGCUUGUAAGUUCUCGAAAGA   1
  =|==*|=|*||||||||||||||
targets:322   GAUUCAGCUUUCAAGAGCUUUCU   344

3.0 PREDICTED: Gossypium arboreum dolichol kinase EVAN-like (LOC108484565), mRNA dolichol kinase EVAN-like(LOC108484565) coding protein psRNATarget