Search result

BaseInfo

ncRNA ID ath-miR775
Species Arabidopsis thaliana
Class miRNA
Genome position chr1:29422452-29422574 [+]
Reference genome TAIR10
Source miRBase
Length 20
Mature sequence(if miRNA) 95 - UUCGAUGUCUAGCAGUGCCA - 114
Stem-loop(if miRNA) U          -    ACGU          C       C    UU    -    UCAACUU
 UUAAACGUUG CACU    GACAUUGAAA UGUCUUU AACA  CCAA UAUU       U
 |||||||||| ||||    |||||||||| ||||||| ||||  |||| ||||       C
 AAUUUGUAAC GUGA    CUGUAGCUUU ACAGAAA UUGU  GGUU AUAA       G
A          C    CGAU          U       C    UU    U    CCCAUAA
Stem-loop sequence UUUAAACGUUGCACUACGUGACAUUGAAACUGUCUUUCAACAUUCCAAUAUUUCAACUUUCGAAUACCCAAUAUUUGGUUUGUUCAAAGACAUUUUCGAUGUCUAGCAGUGCCAAUGUUUAAA

Reference

1 PMID:16954541
"MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant";
Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
Genome Res. 16:1276-1288(2006).
2 PMID:17299599
"High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes";
Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC;
PLoS One. 2:e219(2007).
3 PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana";
Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
Genes Dev. 20:3407-3425(2006).
4 PMID:19815687
"Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis";
Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
J Exp Bot. 61:165-177(2010).