ncRNA ID | ath-miR775 |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | chr1:29422452-29422574 [+] |
Reference genome | TAIR10 |
Source | miRBase |
Length | 20 |
Mature sequence(if miRNA) | 95 - UUCGAUGUCUAGCAGUGCCA - 114 |
Stem-loop(if miRNA) |
U          -    ACGU          C       C    UU    -    UCAACUU  UUAAACGUUG CACU    GACAUUGAAA UGUCUUU AACA  CCAA UAUU       U  |||||||||| ||||    |||||||||| ||||||| ||||  |||| ||||       C  AAUUUGUAAC GUGA    CUGUAGCUUU ACAGAAA UUGU  GGUU AUAA       G A          C    CGAU          U       C    UU    U    CCCAUAA |
Stem-loop sequence | UUUAAACGUUGCACUACGUGACAUUGAAACUGUCUUUCAACAUUCCAAUAUUUCAACUUUCGAAUACCCAAUAUUUGGUUUGUUCAAAGACAUUUUCGAUGUCUAGCAGUGCCAAUGUUUAAA |
1 | PMID:16954541
"MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant"; Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC; Genome Res. 16:1276-1288(2006). |
2 | PMID:17299599
"High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"; Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC; PLoS One. 2:e219(2007). |
3 | PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006). |
4 | PMID:19815687
"Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"; Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW; J Exp Bot. 61:165-177(2010). |