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BaseInfo

ncRNA ID	novel_gar_miR630
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr13:8254897-8254966 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029588
Length	23
Mature sequence(if miRNA)	48 - UAGGGUUUAGGGUUUAGGAUUUA - 70
Stem-loop(if miRNA)	--    G        --  AG    -             UAGG UUUAGGGU  UU  GAUU UAGAGUUUAGG   |||| ||||||||  ||  |||| ||||||||||G   AUUU AGAUUCCG  AG  UUAA AUUUCAGAUUU UG    G        CG  AU    U
Stem-loop sequence	UAGGGUUUAGGGUUUAGGAUUUAGAGUUUAGGGUUUAGACUUUAUAAUUUAGAGCGCCUUAGAGUUUAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017769888.1	ncRNA:23   AUUUAGGAUUUGGGAUUUGGGAU   1   *||||*|||||||||||||||*| targets:96   GAAAUACUAAACCCUAAACCCCA   118 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum nicotinamide/nicotinic acid mononucleotide adenylyltransferase (LOC108469009), transcript variant X1, mRNA	nicotinamide/nicotinic acid mononucleotide adenylyltransferase(LOC108469009)	coding protein	psRNATarget
XM_017769889.1	ncRNA:23   AUUUAGGAUUUGGGAUUUGGGAU   1   *||||*|||||||||||||||*| targets:96   GAAAUACUAAACCCUAAACCCCA   118 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum nicotinamide/nicotinic acid mononucleotide adenylyltransferase (LOC108469009), transcript variant X2, mRNA	nicotinamide/nicotinic acid mononucleotide adenylyltransferase(LOC108469009)	coding protein	psRNATarget
XM_017783079.1	ncRNA:23   AUUUAGGAUUUGGGAUUUGGGAU   1   |**=||=||||||||||||||*| targets:2   UCUGUCUUAAACCCUAAACCCCA   24 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum probable DEAD-box ATP-dependent RNA helicase 48 (LOC108480180), transcript variant X1, mRNA	probable DEAD-box ATP-dependent RNA helicase 48(LOC108480180)	coding protein	psRNATarget
XM_017783080.1	ncRNA:23   AUUUAGGAUUUGGGAUUUGGGAU   1   |**=||=||||||||||||||*| targets:2   UCUGUCUUAAACCCUAAACCCCA   24 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum probable DEAD-box ATP-dependent RNA helicase 48 (LOC108480180), transcript variant X2, mRNA	probable DEAD-box ATP-dependent RNA helicase 48(LOC108480180)	coding protein	psRNATarget
XM_017780855.1	ncRNA:23   AUUUAGGAUUUGGGAUUUGGGAU   1   |=||*==|||||||||||||||| targets:36   UGAAGUUUAAACCCUAAACCCUA   58 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum mitochondrial substrate carrier family protein E (LOC108478396), transcript variant X1, mRNA	mitochondrial substrate carrier family protein E(LOC108478396)	coding protein	psRNATarget
XM_017780856.1	ncRNA:23   AUUUAGGAUUUGGGAUUUGGGAU   1   |=||*==|||||||||||||||| targets:36   UGAAGUUUAAACCCUAAACCCUA   58 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum mitochondrial substrate carrier family protein E (LOC108478396), transcript variant X2, mRNA	mitochondrial substrate carrier family protein E(LOC108478396)	coding protein	psRNATarget
XM_017760830.1	ncRNA:23   AUUUAGGAUUUGGGAUUUGGGAU   1   *||||*=*||||||||||||||| targets:21   AAAAUAUAAAACCCUAAACCCUA   43 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum prohibitin-1, mitochondrial (LOC108461123), transcript variant X1, mRNA	prohibitin-1, mitochondrial(LOC108461123)	coding protein	psRNATarget
XM_017760831.1	ncRNA:23   AUUUAGGAUUUGGGAUUUGGGAU   1   *||||*=*||||||||||||||| targets:11   AAAAUAUAAAACCCUAAACCCUA   33 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum prohibitin-1, mitochondrial (LOC108461123), transcript variant X2, mRNA	prohibitin-1, mitochondrial(LOC108461123)	coding protein	psRNATarget
XM_017787034.1	ncRNA:23   AUUUAGGA---UUUGGGAUUUGGGAU   1   |***||||---||||||||||||||| targets:11   UCCCUCCUUGAAAACCCUAAACCCUA   36 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum mediator-associated protein 2 (LOC108483570), mRNA	mediator-associated protein 2(LOC108483570)	coding protein	psRNATarget