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BaseInfo

ncRNA ID	novel_gar_miR628
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr10:26497861-26498075 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029586
Length	24
Mature sequence(if miRNA)	192 - AGGAUUGUAUGAAACAGUAACGCC - 215
Stem-loop(if miRNA)	--              C            C          A                                                      -----CAUC    AA   AGGAUUGUAUGAAA AGUAACGCCACG CAUUUGUACC AUUUCCAAUAGUUUUAUGCCGCAUCAGUAUUAUCAUCCUAAAUUUCAGCAUUUU         UUGA  A   |||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||   UCCUAACAUAUUUU UUAUUGCGGUGU GUAAACAUGG UAAAGGUUAUCAAAAUACGGCGUAGUCGUAAUAGUAGGAUUUAAAGUCGUAAAA         AACU  A UU              A            A          G                                                      UUAAAUCUA    AA
Stem-loop sequence	AGGAUUGUAUGAAACAGUAACGCCACGCCAUUUGUACCAAUUUCCAAUAGUUUUAUGCCGCAUCAGUAUUAUCAUCCUAAAUUUCAGCAUUUUCAUCUUGAAAAAAAUCAAAUCUAAAUUAAAAUGCUGAAAUUUAGGAUGAUAAUGCUGAUGCGGCAUAAAACUAUUGGAAAUGGGUACAAAUGAUGUGGCGUUAUUAUUUUAUACAAUCCUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017758885.1	ncRNA:24   CCGCAAUGACAAAGUAUGUUAGGA   1   |||||*|||||||||||||||||| targets:1532   GGCGUCACUGUUUCAUACAAUCCU   1555 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum enolase-like (LOC108459500), mRNA	enolase-like(LOC108459500)	coding protein	psRNATarget
XM_017758885.1	ncRNA:24   CCGCAAUGACAAAGUAUGUUAGGA   1   ||=||*|||||||||||||||||| targets:1801   GGUGUCACUGUUUCAUACAAUCCU   1824 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum enolase-like (LOC108459500), mRNA	enolase-like(LOC108459500)	coding protein	psRNATarget
XM_017790570.1	ncRNA:24   CCGCAAUGACAAAGUAUGUUAGGA   1   *|=*|||||||||*|||||||||* targets:546   AGUAUUACUGUUUAAUACAAUCCA   569 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108486492 (LOC108486492), transcript variant X1, mRNA	uncharacterized LOC108486492(LOC108486492)	coding protein	psRNATarget
XM_017790571.1	ncRNA:24   CCGCAAUGACAAAGUAUGUUAGGA   1   *|=*|||||||||*|||||||||* targets:546   AGUAUUACUGUUUAAUACAAUCCA   569 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108486492 (LOC108486492), transcript variant X2, mRNA	uncharacterized LOC108486492(LOC108486492)	coding protein	psRNATarget
XM_017786589.1	ncRNA:24   CCGCAAUGACAAAGUAUGUUAGGA   1   |***|||*||||||||||||*||| targets:1438   GAGUUUAAUGUUUCAUACAAACCU   1461 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum ABC transporter E family member 2 (LOC108483287), mRNA	ABC transporter E family member 2(LOC108483287)	coding protein	psRNATarget