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BaseInfo

ncRNA ID	novel_gar_miR623
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr10:10189645-10189780 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029588
Length	21
Mature sequence(if miRNA)	116 - UUGGAAAGGGAUACAAGUGAC - 136
Stem-loop(if miRNA)	--A                            C     C           C        AAUUAA   CA    AUUUGUAUUCUUUUCCAAUAAUUUAAUG CAUUU AGUAUUUUCAU UUAAAAAA      AUC  A    |||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||      |||    UGAACAUAGGGAAAGGUUAUUAAAUUAU GUAAA UCGUAAAAGUA AGUUUUUU      UAG  A CAG                            A     A           -        -AACUG   UA
Stem-loop sequence	AAUUUGUAUUCUUUUCCAAUAAUUUAAUGCCAUUUCAGUAUUUUCAUCUUAAAAAAAAUUAAAUCCAAAAUGAUGUCAAUUUUUUGAAUGAAAAUGCUAAAAUGAUAUUAAAUUAUUGGAAAGGGAUACAAGUGAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017758885.1	ncRNA:21   CAGUGAACAUAGGGAAAGGUU   1   ||||=*||||||||||||||| targets:1639   GUCAUCUGUAUCCCUUUCCAA   1659 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum enolase-like (LOC108459500), mRNA	enolase-like(LOC108459500)	coding protein	psRNATarget
XM_017759563.1	ncRNA:21   CAGUGAACAUAGGGAAAGGUU   1   ||||=*||||||||||||||| targets:2371   GUCAUCUGUAUCCCUUUCCAA   2391 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum L-type lectin-domain containing receptor kinase IX.1-like (LOC108460187), mRNA	L-type lectin-domain containing receptor kinase IX.1-like(LOC108460187)	coding protein	psRNATarget
XM_017786227.1	ncRNA:21   CAGUGAACAUAGGGAAAGGUU   1   *|||=||||*||||||||||| targets:495   AUCAUUUGUCUCCCUUUCCAA   515 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum myosin-2-like (LOC108483042), transcript variant X4, mRNA	myosin-2-like(LOC108483042)	coding protein	psRNATarget
XM_017786226.1	ncRNA:21   CAGUGAACAUAGGGAAAGGUU   1   *|||=||||*||||||||||| targets:1066   AUCAUUUGUCUCCCUUUCCAA   1086 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum myosin-2-like (LOC108483042), transcript variant X3, mRNA	myosin-2-like(LOC108483042)	coding protein	psRNATarget
XM_017786224.1	ncRNA:21   CAGUGAACAUAGGGAAAGGUU   1   *|||=||||*||||||||||| targets:1126   AUCAUUUGUCUCCCUUUCCAA   1146 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum myosin-2-like (LOC108483042), transcript variant X1, mRNA	myosin-2-like(LOC108483042)	coding protein	psRNATarget
XM_017786225.1	ncRNA:21   CAGUGAACAUAGGGAAAGGUU   1   *|||=||||*||||||||||| targets:1233   AUCAUUUGUCUCCCUUUCCAA   1253 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum myosin-2-like (LOC108483042), transcript variant X2, mRNA	myosin-2-like(LOC108483042)	coding protein	psRNATarget
XM_017749062.1	ncRNA:21   CAGUGAACAUAGGGAAAGGUU   1   |*|*||||*|||||||||||| targets:744   GGCCCUUGAAUCCCUUUCCAA   764 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like (LOC108451368), mRNA	transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like(LOC108451368)	coding protein	psRNATarget