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BaseInfo

ncRNA ID	novel_gar_miR622
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr13:45886792-45886850 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029588
Length	24
Mature sequence(if miRNA)	1 - ACGGGUAAGGGGUGUUACAUGGCA - 24
Stem-loop(if miRNA)	---UUAA         G     UGU    G        UAAUACCUC UACCC   UCCG C        ||||||||| |||||   ||||        AUUGUGGGG AUGGG   AGGC G ACGGUAC         A     CAU    A
Stem-loop sequence	UUAAUAAUACCUCGUACCCUGUUCCGGCGACGGAUACGGGUAAGGGGUGUUACAUGGCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017752446.1	ncRNA:24   ACGGUACAUUGUGGGGAAUGGGCA   1   *|=|*||||||||||||||||||| targets:1244   GGUCUUGUAACACCCCUUACCCGU   1267 Target Full Sequence	0.0	PREDICTED: Gossypium arboreum uncharacterized LOC108454119 (LOC108454119), transcript variant X4, mRNA	uncharacterized LOC108454119(LOC108454119)	coding protein	psRNATarget
XM_017752445.1	ncRNA:24   ACGGUACAUUGUGGGGAAUGGGCA   1   *|=|*||||||||||||||||||| targets:1250   GGUCUUGUAACACCCCUUACCCGU   1273 Target Full Sequence	0.0	PREDICTED: Gossypium arboreum uncharacterized LOC108454119 (LOC108454119), transcript variant X3, mRNA	uncharacterized LOC108454119(LOC108454119)	coding protein	psRNATarget
XM_017764970.1	ncRNA:24   ACG------GUACAUUGUGGGGAAUGGGCA   1   |||------|||||||||||||*||||||| targets:518   UGCACAUUACAUGUAACACCCCAUACCCGU   547 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum serine/threonine-protein phosphatase 7 long form homolog (LOC108464605), transcript variant X1, mRNA	serine/threonine-protein phosphatase 7 long form homolog(LOC108464605)	coding protein	psRNATarget
XM_017764971.1	ncRNA:24   ACG------GUACAUUGUGGGGAAUGGGCA   1   |||------|||||||||||||*||||||| targets:590   UGCACAUUACAUGUAACACCCCAUACCCGU   619 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum serine/threonine-protein phosphatase 7 long form homolog (LOC108464605), transcript variant X2, mRNA	serine/threonine-protein phosphatase 7 long form homolog(LOC108464605)	coding protein	psRNATarget
XM_017773132.1	ncRNA:24   ACG----GUACAUUGUGGGGAAUGGGCA   1   |||----|=||||==||||||||||||| targets:411   UGCGAUGCGUGUAGUACCCCUUACCCGU   438 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum uncharacterized LOC108471531 (LOC108471531), mRNA	uncharacterized LOC108471531(LOC108471531)	coding protein	psRNATarget