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BaseInfo

ncRNA ID	novel_gar_miR615
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr13:66374661-66374803 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029588
Length	24
Mature sequence(if miRNA)	120 - AAAGUAUGAUGAUGUGACACUCUA - 143
Stem-loop(if miRNA)	-A   -             C   C  AAG     C   A           AAAUUUA       A  U      A   AAG UAUGAUGAUGUGA ACU UA   UUAUG CAC UUAUCACUUAA       AUUUUUU UA AAAAUA A   ||| ||||||||||||| ||| ||   ||||| ||| |||||||||||       ||||||| || ||||||   UUC AUACUACUGUACU UGA AU   AAUAC GUG AAUAGUGAAUU       UAAAAAA AU UUUUAU A AA   U             A   A  ACG     A   C           -------       A  U      A
Stem-loop sequence	AAAGUAUGAUGAUGUGACACUCUAAAGUUAUGCCACAUUAUCACUUAAAAAUUUAAUUUUUUAUAUAAAAUAAAAAUAUUUUUUAAAAAAAAUUUAAGUGAUAACGUGACAUAAGCAUAAAGUAUCAUGUCAUCAUAUCUUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017790405.1	ncRNA:24   AUCU-----CACAGUGUAGUAGUAUGAAA   1   |=||-----||*|*=|||||||||||||| targets:1493   UGGAAAUAUGUAUGGCAUCAUCAUACUUU   1521 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum SNF2 domain-containing protein CLASSY 1-like (LOC108486372), transcript variant X3, mRNA	SNF2 domain-containing protein CLASSY 1-like(LOC108486372)	coding protein	psRNATarget
XM_017790404.1	ncRNA:24   AUCU-----CACAGUGUAGUAGUAUGAAA   1   |=||-----||*|*=|||||||||||||| targets:2063   UGGAAAUAUGUAUGGCAUCAUCAUACUUU   2091 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum SNF2 domain-containing protein CLASSY 1-like (LOC108486372), transcript variant X2, mRNA	SNF2 domain-containing protein CLASSY 1-like(LOC108486372)	coding protein	psRNATarget
XM_017790403.1	ncRNA:24   AUCU-----CACAGUGUAGUAGUAUGAAA   1   |=||-----||*|*=|||||||||||||| targets:2081   UGGAAAUAUGUAUGGCAUCAUCAUACUUU   2109 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum SNF2 domain-containing protein CLASSY 1-like (LOC108486372), transcript variant X1, mRNA	SNF2 domain-containing protein CLASSY 1-like(LOC108486372)	coding protein	psRNATarget