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BaseInfo

ncRNA ID	novel_gar_miR610
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr13:74205423-74205548 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029588
Length	21
Mature sequence(if miRNA)	1 - AUGAGAAUCUUGAUGAUGCUG - 21
Stem-loop(if miRNA)	--               A     CAU   U    - -   C -A    UA         AUCAU   GCAUCAUCAAGAUUC CGUAU   UCU AGGG C AAU G  AUAU  AUGGUGAAG     C   ||||||||||||||| |||||   ||| |||| | ||| |  ||||  |||||||||     C   CGUAGUAGUUCUAAG GUAUA   AGG UCCC G UUA C  UGUA  UACCACUUC     U GU               A     UAU   U    U A   A CA    CA         GUUUU
Stem-loop sequence	GCAUCAUCAAGAUUCACGUAUCAUUCUUAGGGCAAUCGAAUAUUAAUGGUGAAGAUCAUCCUUUUUGCUUCACCAUACAUGUACCAAUUAGUCCCUUGGAUAUAUAUGAGAAUCUUGAUGAUGCUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017761102.1	ncRNA:21   GUCGUAGUAGUUCUAAGAGUA   1   |||||||||||=||||||||| targets:1497   CAGCAUCAUCAGGAUUCUCAU   1517 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum ethylene-responsive transcription factor RAP2-7-like (LOC108461300), transcript variant X2, mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC108461300)	coding protein	psRNATarget
XM_017761101.1	ncRNA:21   GUCGUAGUAGUUCUAAGAGUA   1   |||||||||||=||||||||| targets:1504   CAGCAUCAUCAGGAUUCUCAU   1524 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum ethylene-responsive transcription factor RAP2-7-like (LOC108461300), transcript variant X1, mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC108461300)	coding protein	psRNATarget
XM_017761103.1	ncRNA:21   GUCGUAGUAGUUCUAAGAGUA   1   |||||||||||=||||||||| targets:1550   CAGCAUCAUCAGGAUUCUCAU   1570 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum ethylene-responsive transcription factor RAP2-7-like (LOC108461300), transcript variant X3, mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC108461300)	coding protein	psRNATarget
XM_017765194.1	ncRNA:21   GUCGUAGUAGUUCUAAGAGUA   1   |||||||||||=||||||||| targets:1564   CAGCAUCAUCAGGAUUCUCAU   1584 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum floral homeotic protein APETALA 2-like (LOC108464908), mRNA	floral homeotic protein APETALA 2-like(LOC108464908)	coding protein	psRNATarget
XM_017768246.1	ncRNA:21   GUCGUAGUAGUUCUAAGAGUA   1   **|=||=|||||||||||||* targets:502   GUGUAUUAUCAAGAUUCUCAA   522 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum casein kinase II subunit alpha-like (LOC108467571), mRNA	casein kinase II subunit alpha-like(LOC108467571)	coding protein	psRNATarget
XM_017771580.1	ncRNA:21   GUCGUAGUAGUUCUAAGAGUA   1   **|=||=|||||||||||||* targets:578   AUGUAUUAUCAAGAUUCUCAA   598 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum casein kinase II subunit alpha-like (LOC108470284), transcript variant X2, mRNA	casein kinase II subunit alpha-like(LOC108470284)	coding protein	psRNATarget
XM_017771579.1	ncRNA:21   GUCGUAGUAGUUCUAAGAGUA   1   **|=||=|||||||||||||* targets:583   AUGUAUUAUCAAGAUUCUCAA   603 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum casein kinase II subunit alpha-like (LOC108470284), transcript variant X1, mRNA	casein kinase II subunit alpha-like(LOC108470284)	coding protein	psRNATarget
XM_017762883.1	ncRNA:21   GUCGUAGUAGUUCUAAGAGUA   1   =|*|*|||||||||||||||* targets:1390   UACCUUCAUCAAGAUUCUCAA   1410 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum putative receptor-like protein kinase At4g00960 (LOC108462961), transcript variant X2, mRNA	putative receptor-like protein kinase At4g00960(LOC108462961)	coding protein	psRNATarget
XM_017762882.1	ncRNA:21   GUCGUAGUAGUUCUAAGAGUA   1   =|*|*|||||||||||||||* targets:1417   UACCUUCAUCAAGAUUCUCAA   1437 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum putative receptor-like protein kinase At4g00960 (LOC108462961), transcript variant X1, mRNA	putative receptor-like protein kinase At4g00960(LOC108462961)	coding protein	psRNATarget