ncRNA ID |
ath_circ_028179 |
Species |
Arabidopsis thaliana |
Class |
circRNA |
Genome position |
5:19207502-19209688[+/+] |
Reference genome |
TAIR10 |
Source |
PlantcircBase
|
Method |
find_circ/NA |
Type |
exonic |
Splice junction sequence |
AGAAATTGGAAATGGAGTTGCCGATTCATGGTTAATGCCGCTTACACGACAAGCGGAAATAGCGTGTGAGAAGGTGAAGCAAATGAAAGAGTTGAGTCAATCATAATGCTTCACGGAATCGCATCTCAATGTTCTGATGATACAAATGCTAACTTCACACAGCTTCTCACTAACCTCTCTGGCTCTCCTGGCTTTTGCTT |
Tissues |
leaf/aerial, inflorescences, seed, whole_plant |
Exon boundary |
Yes-Yes |
Splicing signals |
AG-GT |
circRNA sequence |
NA |
Genomic sequence |
AGAAATTGGAAATGGAGTTGCCGATTCATGGTTAATGCCGCTTACACGACAAGCGGAAATAGCGTGTGAGAAGGTGAAGCAAATGAAAGAGTTGAGTCAAGGATACAACATTGTTGGAAGATCTCAGGTTCTTGATACACTTTCTTGAAAATCCTAAAATAGGTTCTTGATCATTATTTACATAGTGTTTAAGTTTCATGGATGTTGATTAATAATGGAACAGGGGAACCTAGTGGCTCGAGGCTTGATCGAGTTCTGTGACGGTGGCCCTCCGGTTTACAACTATATATCCTTGGCCGGTCCTCATGCTGGCATCTCCTCTGTTCCTATGTGTGGTGTAAGTTTTTTTTATAAATCTTTTTTCTCTAAATATTTTTTCTATGATTTTAATTTAATCAATCAATCACAGTAACAACATTGTCTTTTTCTTGTTAAAGTCTGGTTTATTCTGTAAGTTAGCAGATGAGCTAATCAAGGGAGATATCTATAGCGACTTCATTCAAGTATAAATCTCTTTCTGTCTTTTTTAGGATTAAATCCTCAGTAGTTACAAATTAATTAACATATATCTTTAATAACCCTGCAGGATCATCTTGCTCCTAGTGGTTATCTCAAAATTCCTACTGTATGTCTACTCACCAAATATATTTTGATGATAAAAAAACTACTTCAAAATTTGAGATATCACAAAATCTTTGTTTTTGATTTATCAGGATATGACAAAGTACTTGGGAAGCTCTAAGTATTTACCTAAGCTTAACAATGAGATACCAGACCAAAGAAACCAAACTTACAAAGACCGTTTCACCAGTTTACATAACTTGGTTCTTATCAAGGTTTGGTCTCCTAAAAACCATCTAGACTTTTCAATTATCTTTTGATTCCTCTCTTGATGATTCGGTTTTTGTTTGTTTTACAGTTTCAGGGCGACAAGGTTATAGTTCCAAAAGATTCATCTTGGTTCGGGTTTTATCCGGATGGTGAATTCGAACCTCTTCTCTCTGCTCAACAGACAAAGCTCTATACAGAGGATTGGATCGGTCTGAAAACATTGGATGATGCGGGAAAAGTGAAGTTTGTGAGTGTAGCCGGTGAACATATCAGAATGGTAGATGAAGATGTCGTCAAACACGTTGTACCTTATCTCCAGGACCAACCGTCTTCGGTGCAAAGCTTCAACCGCAAGACGAAGCAGCCCTTGCATGCTTAAAAATAGCAAATACCACAATAGTTATACTTATTCATGCAATATATGTCGAAAAAGCTTAGTGATGATTTTGTAGAATCCTTATTCTTATAGAAATATATACATACTTATCTGAAAAATCGAATTAATCAGTAGAGAAACGACTCATGAGATCTTCATCACCACATTTGTATCAAGGCTTCAATGGTTTTCTCAACATGAGAAACTTCCAATCTCATTTTTTTTTGTTTTTGTTGTTGTAGAAGTCTCCCAAAATGACTCGAAGTTTTTTCCTTTTTGGTTCTTTAGTCTCACCAAATTACATATTATTTTTAAATAATCTAACAATTCTCCAAATATCCTAAAAACTAATTCATATCTCTCCAAATCTAAAATTTCCTAAATTCCACCAAATTTTCTAAAATCATGAATCCAATACACTCCCTGATTCAAATCTCTCCAAATCTAAAATTTCCTAAGTTCCACCAGATAATGAATCCAATACACACCCCTAAGAGAGGCAACGCGGAGATGTCATTAGAGGAGGAACTAGGAAGCAGAGCGTTAATGCAAAATGTTACCAAAAACGTTAATGCAAGATATCAACTGATCAGCACCGTCCATTTCAAACTGAGAATGTAAAAACCAATCACAATCGTACATTTTTTCATCTAGTTCTTCGTTCTTGGCCACAACGTCCAACCACATGACGCTCTTTCTACTCACTTTATATATTCCCATCTCAAAAGTTCTTGGAGACACAAAATATCATAAACATATAAACGCCAATTAGAACTTTTTTACTTGTGGCGGTTTACAATGGAGAAAGGTTTGAAGCGATCTTGTGTTATGGTGGTGGTTGCATTCTTAGCCAAGGTTGATATCTCAGTTTCAGTTCCGTTCATAATGCTTCACGGAATCGCATCTCAATGTTCTGATGATACAAATGCTAACTTCACACAGCTTCTCACTAACCTCTCTGGCTCTCCTGGCTTTTGCTT |