ncRNA ID | novel_gar_miR595 |
Species | Gossypium arboreum |
Class | miRNA |
Genome position | Chr1:6567741-6567845 [+] |
Reference genome | Gossypium_arboreum_v1.0 |
Source | SRR1029586;SRR1029588;SRR3180715;SRR3180720;SRR3180721;SRR959748;SRR959750;SRR1029587 |
Length | 21 |
Mature sequence(if miRNA) | 85 - CUGAAGUGUUUGGGGGAACUC - 105 |
Stem-loop(if miRNA) |
--       UG U       CUG       -    U  G     ---------    U   GUUCCCC  A CACUUCA   GGGUUAU GGGG CU CUCUU         CUCU C   |||||||  | |||||||   ||||||| |||| || |||||         ||||   CAAGGGG  U GUGAAGU   UCCAGUA CCUC GG GGGAA         GAGA U CU       GU U       -CA       G    U  A     AAUUGUUCC    C |
Stem-loop sequence | GUUCCCCUGAUCACUUCACUGGGGUUAUGGGGUCUGCUCUUCUCUUCUCAGAGCCUUGUUAAAAGGGAGGUCUCCGAUGACCUACUGAAGUGUUUGGGGGAACUC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_017760230.1 |
|
1.0 | PREDICTED: Gossypium arboreum serine hydroxymethyltransferase 7-like (LOC108460652), transcript variant X1, mRNA | serine hydroxymethyltransferase 7-like(LOC108460652) | coding protein | psRNATarget | |||||||||
XM_017792734.1 |
|
2.0 | PREDICTED: Gossypium arboreum sulfate transporter 2.1-like (LOC108488456), mRNA | sulfate transporter 2.1-like(LOC108488456) | coding protein | psRNATarget | |||||||||
XM_017792733.1 |
|
2.0 | PREDICTED: Gossypium arboreum sulfate transporter 2.1-like (LOC108488455), mRNA | sulfate transporter 2.1-like(LOC108488455) | coding protein | psRNATarget | |||||||||
XM_017761582.1 |
|
3.0 | PREDICTED: Gossypium arboreum mitochondrial import inner membrane translocase subunit TIM22-2-like (LOC108461677), mRNA | mitochondrial import inner membrane translocase subunit TIM22-2-like(LOC108461677) | coding protein | psRNATarget |