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BaseInfo

ncRNA ID	novel_gar_miR593
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr13:117409033-117409099 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029588;SRR1029587;SRR1029586
Length	20
Mature sequence(if miRNA)	48 - AAGGAGAGGAGAAAGCUCUA - 67
Stem-loop(if miRNA)	--A      G   A     --G   A  -A   C G    AGUUUU UCC UCUUU   UUC UC  UAG C A    |||||| ||| |||||   ||| ||  ||| |    UCGAAA AGG AGAGG   GAG AG  AUU G A AUC      G   -     AAA   A  AG   - A
Stem-loop sequence	AAGUUUUGUCCAUCUUUGUUCAUCAUAGCCGAAAGUUAGAGAAGAGAAAGGAGAGGAGAAAGCUCUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017783668.1	ncRNA:20   AUCUCGAAAGAGGAGAGGAA   1   *||=|=|||||||||||||* targets:223   AAGGGUUUUCUCCUCUCCUA   242 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum proton pump-interactor 1-like (LOC108480618), transcript variant X2, mRNA	proton pump-interactor 1-like(LOC108480618)	coding protein	psRNATarget
XM_017772509.1	ncRNA:20   AUCUCGAAAGAGGAGAGGAA   1   **|=*||||||||||||||| targets:59   AUGGCCUUUCUCCUCUCCUU   78 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum uncharacterized LOC108470967 (LOC108470967), transcript variant X2, mRNA	uncharacterized LOC108470967(LOC108470967)	coding protein	psRNATarget
XM_017772508.1	ncRNA:20   AUCUCGAAAGAGGAGAGGAA   1   **|=*||||||||||||||| targets:59   AUGGCCUUUCUCCUCUCCUU   78 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum uncharacterized LOC108470967 (LOC108470967), transcript variant X1, mRNA	uncharacterized LOC108470967(LOC108470967)	coding protein	psRNATarget