Search result

BaseInfo

ncRNA ID	ath-miRf11000-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	24
Mature sequence(if miRNA)	NA - UACUCGACCUCGUGGUCGAGUGGU - NA
Stem-loop(if miRNA)	G G   -  G  U UACUCGACCUCGUGGUCGAGUG U UCA UC AG G |||||||||||||||||||||| | ||| || || AUGAGCUGGAGCACCAGCUCAU G AGU AG UC G                       G -   C  A  C
Stem-loop sequence	UACUCGACCUCGUGGUCGAGUGGUGUCAUCGAGUGGCCUAGACUGAGGUACUCGACCACGAGGUCGAGUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EF183042.1	ncRNA:24   UGGUGAGCUGGUGCUCCAGCUCAU   1   |||||||||||||||||||||||| targets:1525   ACCACUCGACCACGAGGUCGAGUA   1548 Target Full Sequence	0.0	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
NM_103391.1	ncRNA:24   UGGUGAGCUGGUGCUCCAGCUCAU   1   |||||||||||||||||||||||= targets:1149   ACCACUCGACCACGAGGUCGAGUG   1172 Target Full Sequence	1.0	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
EF183194.1	ncRNA:24   UGGUGAGCUGGUGCUCCAGCUCAU   1   |||||||||||||*|||||||||| targets:448   ACCACUCGACCACCAGGUCGAGUA   471 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_2339 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183042.1	ncRNA:24   UGGUGAGCUGGUGCUCCAGCUCAU   1   |=|||||||||*|||||||||||= targets:1616   AUCACUCGACCCCGAGGUCGAGUG   1639 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183194.1	ncRNA:24   UGGUGAGCUGGUGCUCCAGCUCAU   1   *=||||||||||=||||||||||= targets:515   UUCACUCGACCAUGAGGUCGAGUG   538 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2339 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183194.1	ncRNA:24   UG-GUGAGCUGGUGCUCCAGCUCAU   1   ||-|||||*||||*||||||||||| targets:573   ACUCACUCUACCAAGAGGUCGAGUA   597 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2339 unknown mRNA sequence	NA	coding protein	psRNATarget
AY227642.1	ncRNA:24   UGGUGAGCUGGUGCUCCAGCUCAU   1   |||||||||||*|||||||||||= targets:853   ACCACUCGACCCCGAGGUCGAGUG   876 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds	NA	coding protein	psRNATarget
AY227642.1	ncRNA:24   UGGUGAGCUGGUGCUCCAGCUCAU   1   ||||||||||*||*|||||||||| targets:807   ACCACUCGACAACCAGGUCGAGUA   830 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds	NA	coding protein	psRNATarget
EF183005.1	ncRNA:24   UGGUGAGCUGGUGCUCCAGCUCAU   1   =*||||||||||||=||||||||= targets:1922   GGCACUCGACCACGGGGUCGAGUG   1945 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_10069 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183005.1	ncRNA:24   UGGUGAGCUGGUGCUCCAGCUCAU   1   =*|||||||||*|||||||||||= targets:1863   GGCACUCGACCUCGAGGUCGAGUG   1886 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_10069 unknown mRNA sequence	NA	coding protein	psRNATarget
DQ069808.1	ncRNA:24   UGGUGAGCUGGUGCUCCAGCUCAU   1   |||||||*|||||*|||||||||| targets:43   ACCACUCAACCACAAGGUCGAGUA   66 Target Full Sequence	2.5	Arabidopsis thaliana At2g10880 mRNA, partial sequence	NA	coding protein	psRNATarget
AY231407.1	ncRNA:24   UGGUGAGCUGGUGCUCCAGCUCAU   1   ||=||||*||||||*||||||||| targets:641   ACUACUCAACCACGUGGUCGAGUA   664 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget