A ncRNA database for oil producing plants

Search result

BaseInfo

ncRNA ID	novel_gar_miR575
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr1:48029077-48029197 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029586;SRR1029588;SRR3180719;SRR3180721
Length	21
Mature sequence(if miRNA)	1 - UUCCACAGCUUUCUUGAACUG - 21
Stem-loop(if miRNA)	-- C UU - U UUUUC UG UAUUUU UU A UUCCACAGCUUU UUGAACUGCAAC CGU C UACAU CU U GUG GCUU U \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \| \|\|\|\|\| \|\| \| \|\|\| \|\|\|\| AGGGUGUCGAAA AACUUGGCGUUG GUA G AUGUA GA G UAU CGGA A GA U CU U U ----U GU ------ GG U
Stem-loop sequence	UUCCACAGCUUUCUUGAACUGCAACUUCGUCUUACAUUUUUCCUUGUUAUUUUGUGUUGCUUAUAUAGGCGGUAUGUGAGUAUGUAUGUAUGUCGUUGCGGUUCAAUAAAGCUGUGGGAAG

Targets Info

Target Acc

Alignment

Exception

Target Description

Target Gene Name

Target Type

Method

XM_017763233.1

ncRNA:21	GUCAAGUUCUUUCG-ACACCUU	1
	\|*\|\|\|\|\|\|\|\|\|\|\|\|-\|\|\|\|\|\|\|
targets:418	CCGUUCAAGAAAGCAUGUGGAA	439

3.0

PREDICTED: Gossypium arboreum growth-regulating factor 6-like (LOC108463287), mRNA

growth-regulating factor 6-like(LOC108463287)

coding protein

psRNATarget

XM_017762404.1

ncRNA:21	GUCAAGUUCUUUCG-ACACCUU	1
	\|*\|\|\|\|\|\|\|\|\|\|\|\|-\|\|\|\|\|\|\|
targets:329	CCGUUCAAGAAAGCCUGUGGAA	350

3.0

PREDICTED: Gossypium arboreum growth-regulating factor 4-like (LOC108462455), mRNA

growth-regulating factor 4-like(LOC108462455)

coding protein

psRNATarget

XM_017764713.1

ncRNA:21	GUCAAGUUCUUUCG-ACACCUU	1
	\|*\|\|\|\|\|\|\|\|\|\|\|\|-\|\|\|\|\|\|\|
targets:523	CCGUUCAAGAAAGCCUGUGGAA	544

3.0

PREDICTED: Gossypium arboreum growth-regulating factor 4-like (LOC108464420), mRNA

growth-regulating factor 4-like(LOC108464420)

coding protein

psRNATarget

XM_017788246.1

ncRNA:21	GUCAAGUUCUUUCG-ACACCUU	1
	\|*\|\|\|\|\|\|\|\|\|\|\|\|-\|\|\|\|\|\|\|
targets:519	CCGUUCAAGAAAGCCUGUGGAA	540

3.0

PREDICTED: Gossypium arboreum growth-regulating factor 1-like (LOC108484457), transcript variant X2, mRNA

growth-regulating factor 1-like(LOC108484457)

coding protein

psRNATarget

XM_017788244.1

ncRNA:21	GUCAAGUUCUUUCG-ACACCUU	1
	\|*\|\|\|\|\|\|\|\|\|\|\|\|-\|\|\|\|\|\|\|
targets:517	CCGUUCAAGAAAGCCUGUGGAA	538

3.0

PREDICTED: Gossypium arboreum growth-regulating factor 1-like (LOC108484457), transcript variant X1, mRNA

growth-regulating factor 1-like(LOC108484457)

coding protein

psRNATarget

XM_017791566.1

ncRNA:21	GUCAAGUUCUUUCG-ACACCUU	1
	\|*\|\|\|\|\|\|\|\|\|\|\|\|-\|\|\|\|\|\|\|
targets:510	CCGUUCAAGAAAGCCUGUGGAA	531

3.0

PREDICTED: Gossypium arboreum growth-regulating factor 5 (LOC108487265), transcript variant X2, mRNA

growth-regulating factor 5(LOC108487265)

coding protein

psRNATarget

XM_017791565.1

ncRNA:21	GUCAAGUUCUUUCG-ACACCUU	1
	\|*\|\|\|\|\|\|\|\|\|\|\|\|-\|\|\|\|\|\|\|
targets:510	CCGUUCAAGAAAGCCUGUGGAA	531

3.0

PREDICTED: Gossypium arboreum growth-regulating factor 5 (LOC108487265), transcript variant X1, mRNA

growth-regulating factor 5(LOC108487265)

coding protein

psRNATarget

XM_017756386.1

ncRNA:21	GUCAAGUUCUUUCG-ACACCUU	1
	\|*\|\|\|\|\|\|\|\|\|\|\|\|-\|\|\|\|\|\|\|
targets:711	CCGUUCAAGAAAGCCUGUGGAA	732

3.0

PREDICTED: Gossypium arboreum growth-regulating factor 3-like (LOC108457367), transcript variant X2, mRNA

growth-regulating factor 3-like(LOC108457367)

coding protein

psRNATarget

XM_017756385.1

ncRNA:21	GUCAAGUUCUUUCG-ACACCUU	1
	\|*\|\|\|\|\|\|\|\|\|\|\|\|-\|\|\|\|\|\|\|
targets:714	CCGUUCAAGAAAGCCUGUGGAA	735

3.0

PREDICTED: Gossypium arboreum growth-regulating factor 3-like (LOC108457367), transcript variant X1, mRNA

growth-regulating factor 3-like(LOC108457367)

coding protein

psRNATarget

XM_017756380.1

ncRNA:21	GUCAAGUUCUUUCG-ACACCUU	1
	\|*\|\|\|\|\|\|\|\|\|\|\|\|-\|\|\|\|\|\|\|
targets:931	CCGUUCAAGAAAGCCUGUGGAA	952

3.0

PREDICTED: Gossypium arboreum growth-regulating factor 7-like (LOC108457363), mRNA

growth-regulating factor 7-like(LOC108457363)

coding protein

psRNATarget

XM_017780072.1

ncRNA:21	GUCAAGUUCUUUCG-ACACCUU	1
	\|*\|\|\|\|\|\|\|\|\|\|\|\|-\|\|\|\|\|\|\|
targets:982	CCGUUCAAGAAAGCCUGUGGAA	1003

3.0

PREDICTED: Gossypium arboreum uncharacterized LOC108477531 (LOC108477531), mRNA

uncharacterized LOC108477531(LOC108477531)

coding protein

psRNATarget

XM_017780072.1

ncRNA:21	GUCAAGUUCUUUCG-ACACCUU	1
	\|*\|\|\|\|\|\|\|\|\|\|\|\|-\|\|\|\|\|\|\|
targets:1933	CCGUUCAAGAAAGCCUGUGGAA	1954

3.0

PREDICTED: Gossypium arboreum uncharacterized LOC108477531 (LOC108477531), mRNA

uncharacterized LOC108477531(LOC108477531)

coding protein

psRNATarget

XM_017757211.1

ncRNA:21	GUCAAGUUCUUUCG-ACACCUU	1
	**\|\|\|\|\|\|\|\|\|\|\|\|-\|\|\|\|\|\|\|
targets:661	GCGUUCAAGAAAGCCUGUGGAA	682

3.0

PREDICTED: Gossypium arboreum growth-regulating factor 9 (LOC108457986), mRNA

growth-regulating factor 9(LOC108457986)

coding protein

psRNATarget