Search result

BaseInfo

ncRNA ID novel_gar_miR574
Species Gossypium arboreum
Class miRNA
Genome position Chr1:49371820-49371901 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029588;SRR1029586
Length 22
Mature sequence(if miRNA) 1 - GCUCACUUCUCUUUCUGUCAGC - 22
Stem-loop(if miRNA) --        -    -        A        CAU     A
  UGACAGAA GAGA GUGAGCAC CAAAGGCA   GUAUA G
  |||||||| |||| |||||||| ||||||||   |||||
  ACUGUCUU CUCU CACUCGUG GUUUUCGU   CAUAU C
CG        U    U        C        UUU     C
Stem-loop sequence UGACAGAAGAGAGUGAGCACACAAAGGCACAUGUAUAAGCCUAUACUUUUGCUUUUGCGUGCUCACUUCUCUUUCUGUCAGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017764316.1
ncRNA:22   CGACUGUCUUUCUCUUCACUCG   1
  **||||||||||||||||*|||
targets:1397   AAUGACAGAAAGAGAAGUAAGC   1418

1.5 PREDICTED: Gossypium arboreum nucleolar complex protein 3 homolog (LOC108464171), mRNA nucleolar complex protein 3 homolog(LOC108464171) coding protein psRNATarget