Search result

BaseInfo

ncRNA ID	novel_gar_miR566
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr12:74598395-74598444 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029588
Length	21
Mature sequence(if miRNA)	1 - AGGGUGGGUUUGGAUGGGCAG - 21
Stem-loop(if miRNA)	--          U     G    CG   AGGGUGGGUU GGAUG GCAG  G   |||||||||| ||||| ||||  G   UUUUAUUCGA UUUGC UGUC  G UU          -     G    AU
Stem-loop sequence	AGGGUGGGUUUGGAUGGGCAGCGGGGUACUGUGCGUUUAGCUUAUUUUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017754401.1	ncRNA:21   GACGGGUAGGUUUGGGUGGGA   1   *|||||*|||||||||||||* targets:361   AUGCCCUUCCAAACCCACCCC   381 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum heat stress transcription factor A-3 (LOC108455837), transcript variant X1, mRNA	heat stress transcription factor A-3(LOC108455837)	coding protein	psRNATarget
XM_017766797.1	ncRNA:21   GACGGGUAGGUUUGGGUGGGA   1   ***||||||||||||||||=| targets:2643   ACACCCAUCCAAACCCACCUU   2663 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum agamous-like MADS-box protein AGL61 (LOC108466438), mRNA	agamous-like MADS-box protein AGL61(LOC108466438)	coding protein	psRNATarget
XM_017780588.1	ncRNA:21   GACGGGUAGGUUUGGGUGGGA   1   ***||||||||||||||||=| targets:1053   ACACCCAUCCAAACCCACCUU   1073 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum agamous-like MADS-box protein AGL29 (LOC108478169), mRNA	agamous-like MADS-box protein AGL29(LOC108478169)	coding protein	psRNATarget
XM_017765315.1	ncRNA:21   GACGGGUAGGUUUGGGUGGGA   1   ||*||=|*||||||||||||| targets:132   CUCCCUAACCAAACCCACCCU   152 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic-like (LOC108465013), mRNA	protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic-like(LOC108465013)	coding protein	psRNATarget