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BaseInfo

ncRNA ID novel_gar_miR564
Species Gossypium arboreum
Class miRNA
Genome position Chr12:6118982-6119034 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029588;SRR1029587
Length 23
Mature sequence(if miRNA) 31 - GUUGGGUUGGAAUCGUUUGGCGU - 53
Stem-loop(if miRNA) --  UG UU              AAAC
  GU  A  CGAUUUCAAUUCAA    C
  ||  |  ||||||||||||||
  CG  U  GCUAAGGUUGGGUU    G
UG  GU -U              GCGU
Stem-loop sequence GUUGAUUCGAUUUCAAUUCAAAAACCGUGCGUUGGGUUGGAAUCGUUUGGCGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017776017.1
ncRNA:23   UGCGGUUUGCUAAGGUUGGGUUG   1
  ||*=||||*|||||*||||||||
targets:1874   ACAUCAAAGGAUUCAAACCCAAC   1896

2.5 PREDICTED: Gossypium arboreum uncharacterized LOC108474109 (LOC108474109), mRNA uncharacterized LOC108474109(LOC108474109) coding protein psRNATarget