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BaseInfo

ncRNA ID novel_gar_miR561
Species Gossypium arboreum
Class miRNA
Genome position Chr1:67143048-67143249 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029588;SRR1029587
Length 24
Mature sequence(if miRNA) 1 - GUGGGCAAAAUUCAAUUUGACUCC - 24
Stem-loop(if miRNA) --          C   C     C     -         U   C      A                     AG    -     U           A  UUUCA
  AGUCAAAUUG AUU UGCCC AUUUU CUCAAAAAA GGG AAAUUA UCCUUGUAUGUUAGAUCAAAG  CUAA UUGGU CUUUCUGUUAA AA     U
  |||||||||| ||| ||||| ||||| ||||||||| ||| |||||| |||||||||||||||||||||  |||| ||||| ||||||||||| ||
  UCAGUUUAAC UAA ACGGG UGAAA GAGUUUUUU CCC UUUAAU AGGGAUAUGUAAUUUAGUUUU  GAUU GAUCA GGAAGACAAUU UU     C
CC          U   A     -     U         U   A      C                     CU    U     -           G  UUUAC
Stem-loop sequence AGUCAAAUUGCAUUCUGCCCCAUUUUCUCAAAAAAUGGGCAAAUUAAUCCUUGUAUGUUAGAUCAAAGAGCUAAUUGGUUCUUUCUGUUAAAAAUUUCAUCCAUUUUUGUUAACAGAAGGACUAGUUUAGUCUUUUGAUUUAAUGUAUAGGGACUAAUUUACCCUUUUUUUGAGUAAAGUGGGCAAAAUUCAAUUUGACUCC