| ncRNA ID | novel_gar_miR559 |
| Species | Gossypium arboreum |
| Class | miRNA |
| Genome position | Chr12:5370017-5370225 [+] |
| Reference genome | Gossypium_arboreum_v1.0 |
| Source | SRR1029588 |
| Length | 24 |
| Mature sequence(if miRNA) | 186 - AGGGAGGAAAACAGAGAGAGAAGC - 209 |
| Stem-loop(if miRNA) |
-- C A C C A G -UAU AUUUAUAUU C U UUCUC CUCU UUUUCCUCCCUUCU CAUUUCUUUUAAC UAGUUUUUCUAU UUUUCCAUUUGUUAAAGCUAGU CC GC UUUGAA AAA U ||||| |||| |||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||| || || |||||| ||| AAGAG GAGA AAAAGGAGGGAAGA GUAAAGAAAAUUG AUCAAAAAGAUA AAAAGGUAAACAAUUUUGAUCA GG CG GAGCUU UUU A CG A C A U A - UAUU -AGCGGAGU U U |
| Stem-loop sequence | UUCUCCCUCUAUUUUCCUCCCUUCUCCAUUUCUUUUAACCUAGUUUUUCUAUAUUUUCCAUUUGUUAAAGCUAGUGCCUAUGCAUUUAUAUUUUUGAACAAAUUAUUUUUUUCGAGUGAGGCGAGCUUAUGGACUAGUUUUAACAAAUGGAAAAAAUAGAAAAACUAUGUUAAAAGAAAUGAAGAAGGGAGGAAAACAGAGAGAGAAGC |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_017778117.1 |
|
2.0 | PREDICTED: Gossypium arboreum 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like (LOC108476050), mRNA | 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like(LOC108476050) | coding protein | psRNATarget | |||||||||
| XM_017755801.1 |
|
2.5 | PREDICTED: Gossypium arboreum probable ubiquitin conjugation factor E4 (LOC108457009), mRNA | probable ubiquitin conjugation factor E4(LOC108457009) | coding protein | psRNATarget |