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BaseInfo

ncRNA ID	novel_gar_miR558
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr10:51245786-51245979 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029588
Length	24
Mature sequence(if miRNA)	1 - AAGGACCAGUUUGCUCUUUGAUCU - 24
Stem-loop(if miRNA)	--AA      A            C             UC  CA   UC              GGCAUAG   ACGAAA    U   CU  U       AC     CAAAGA CAAGCUGGUCCU UCUAUUAGAAAUU  AU  AUU  UACUAUUAAAAACU       CUG      UAGC AGA  GU ACACGUG  A     |||||| |||||||||||| |||||||||||||  ||  |||  ||||||||||||||       |||      |||| |||  || |||||||     GUUUCU GUUUGACCAGGA AGAUAAUUUUUAA  UA  UAA  AUGAUAAUUUUUGA       GAC      AUCG UCU  CG UGUGCAC  U UCUA      C            -             GA  AG   GA              --ACAGA   -AUACA    U   -C  -       AG
Stem-loop sequence	AACAAAGAACAAGCUGGUCCUCUCUAUUAGAAAUUUCAUCAAUUUCUACUAUUAAAAACUGGCAUAGCUGACGAAAUAGCUAGACUGUUACACGUGACAUGACACGUGUGCCUCUUGCUAACAUACAGAGACAAGUUUUUAAUAGUAAGAAUGAAUAGAAUUUUUAAUAGAAGGACCAGUUUGCUCUUUGAUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017754589.1	ncRNA:24   UCUAGUUUCUCGUUUGACCAGGAA   1   |*||||||*|*||||||||||||| targets:1484   AAAUCAAAAAACAAACUGGUCCUU   1507 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum transcription factor PIF4-like (LOC108455997), mRNA	transcription factor PIF4-like(LOC108455997)	coding protein	psRNATarget
XM_017784090.1	ncRNA:24   UCUAGUUUCUCGUUUGACCAGGAA   1   ||||||||*||||||||||||*|| targets:1330   AGAUCAAAAAGCAAACUGGUCAUU   1353 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108480941 (LOC108480941), transcript variant X1, mRNA	uncharacterized LOC108480941(LOC108480941)	coding protein	psRNATarget
XM_017789991.1	ncRNA:24   UCUA-------GUUUCUCGUUUGACCAGGAA   1   =|||-------||||||*|||||||*||||| targets:1398   GGAUUUUAUUCCAAAGACCAAACUGAUCCUU   1428 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108486142 (LOC108486142), transcript variant X6, mRNA	uncharacterized LOC108486142(LOC108486142)	coding protein	psRNATarget
XM_017789990.1	ncRNA:24   UCUA-------GUUUCUCGUUUGACCAGGAA   1   =|||-------||||||*|||||||*||||| targets:1401   GGAUUUUAUUCCAAAGACCAAACUGAUCCUU   1431 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108486142 (LOC108486142), transcript variant X5, mRNA	uncharacterized LOC108486142(LOC108486142)	coding protein	psRNATarget
XM_017789989.1	ncRNA:24   UCUA-------GUUUCUCGUUUGACCAGGAA   1   =|||-------||||||*|||||||*||||| targets:1490   GGAUUUUAUUCCAAAGACCAAACUGAUCCUU   1520 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108486142 (LOC108486142), transcript variant X3, mRNA	uncharacterized LOC108486142(LOC108486142)	coding protein	psRNATarget
XM_017789988.1	ncRNA:24   UCUA-------GUUUCUCGUUUGACCAGGAA   1   =|||-------||||||*|||||||*||||| targets:1586   GGAUUUUAUUCCAAAGACCAAACUGAUCCUU   1616 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108486142 (LOC108486142), transcript variant X2, mRNA	uncharacterized LOC108486142(LOC108486142)	coding protein	psRNATarget
XM_017789992.1	ncRNA:24   UCUA-------GUUUCUCGUUUGACCAGGAA   1   =|||-------||||||*|||||||*||||| targets:1879   GGAUUUUAUUCCAAAGACCAAACUGAUCCUU   1909 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108486142 (LOC108486142), transcript variant X7, mRNA	uncharacterized LOC108486142(LOC108486142)	coding protein	psRNATarget
XM_017789987.1	ncRNA:24   UCUA-------GUUUCUCGUUUGACCAGGAA   1   =|||-------||||||*|||||||*||||| targets:1878   GGAUUUUAUUCCAAAGACCAAACUGAUCCUU   1908 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108486142 (LOC108486142), transcript variant X1, mRNA	uncharacterized LOC108486142(LOC108486142)	coding protein	psRNATarget