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BaseInfo

ncRNA ID novel_gar_miR554
Species Gossypium arboreum
Class miRNA
Genome position Chr1:37610679-37610757 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029586
Length 24
Mature sequence(if miRNA) 1 - ACUUGGACUUAGAUCGAGGCAAGA - 24
Stem-loop(if miRNA) --     GA     A  ---       GAAC   G  C    U
  ACUUG  CUUAG UC   GAGGCAA    AAA UA UCGA U
  |||||  ||||| ||   |||||||    ||| || ||||
  UGAAU  GAGUC AG   UUUUGUU    UUU AU AGCU A
CU     -G     -  UAU       --AC   G  C    U
Stem-loop sequence ACUUGGACUUAGAUCGAGGCAAGAACAAAGUACUCGAUUAUUCGACUAGUUUCAUUGUUUUUAUGACUGAGGUAAGUUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017790754.1
ncRNA:24   AGAACGGAGCUAGAUUCAGGUUCA   1
  *****|||=|||||||||||||||
targets:2333   AAAACCCUUGAUCUAAGUCCAAGU   2356

1.0 PREDICTED: Gossypium arboreum regulator of telomere elongation helicase 1-like (LOC108486615), mRNA regulator of telomere elongation helicase 1-like(LOC108486615) coding protein psRNATarget