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BaseInfo

ncRNA ID	novel_gar_miR550
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr12:52650281-52650336 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029588
Length	24
Mature sequence(if miRNA)	33 - UCUGCUUCAGCUGUUGAUUGAGCA - 56
Stem-loop(if miRNA)	--  UG  UG      CCU    CUACC   CU  GU  ACAGCU   GCAG     A   ||  ||  ||||||   ||||   GA  UA  UGUCGA   CGUC     C AC  GU  GU      CUU    UCAUA
Stem-loop sequence	CUUGGUUGACAGCUCCUGCAGCUACCACAUACUCUGCUUCAGCUGUUGAUUGAGCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017784384.1	ncRNA:24   ACGAGUUAGUUGUCGACUUCGUCU   1   ||||||||||=||||||||||||| targets:501   UGCUCAAUCAGCAGCUGAAGCAGA   524 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum uncharacterized mitochondrial protein AtMg00810-like (LOC108481223), mRNA	uncharacterized mitochondrial protein AtMg00810-like(LOC108481223)	coding protein	psRNATarget
XM_017758373.1	ncRNA:24   ACGAGUUAGUUGUCGACUUCGUCU   1   |||||||||*|||||||||||||| targets:519   UGCUCAAUCCACAGCUGAAGCAGA   542 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum uncharacterized mitochondrial protein AtMg00810-like (LOC108458998), mRNA	uncharacterized mitochondrial protein AtMg00810-like(LOC108458998)	coding protein	psRNATarget
XM_017769510.1	ncRNA:24   ACGAGUUAGUUGUCGACUUCGUCU   1   *||||||||*|||||||||||||| targets:375   AGCUCAAUCCACAGCUGAAGCAGA   398 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum uncharacterized mitochondrial protein AtMg00810-like (LOC108468636), mRNA	uncharacterized mitochondrial protein AtMg00810-like(LOC108468636)	coding protein	psRNATarget
XM_017757951.1	ncRNA:24   ACGAGUUAGUUGUCGACUUCGUCU   1   |||||||||||||||||||*|||| targets:297   UGCUCAAUCAACAGCUGAACCAGA   320 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum uncharacterized mitochondrial protein AtMg00810-like (LOC108458526), mRNA	uncharacterized mitochondrial protein AtMg00810-like(LOC108458526)	coding protein	psRNATarget
XM_017755530.1	ncRNA:24   ACGAGUUAGUUGUCGACUUCGUCU   1   ||||*||||||*|||||||||||| targets:1623   UGCUGAAUCAAAAGCUGAAGCAGA   1646 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1D (LOC108456832), mRNA	putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1D(LOC108456832)	coding protein	psRNATarget
XM_017789169.1	ncRNA:24   ACGAGUUAGUUGUCGACUUCGUCU   1   |||||||||*|||||||||||*|| targets:375   UGCUCAAUCUACAGCUGAAGCUGA   398 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized mitochondrial protein AtMg00810-like (LOC108485358), mRNA	uncharacterized mitochondrial protein AtMg00810-like(LOC108485358)	coding protein	psRNATarget
XM_017756596.1	ncRNA:24   ACGAGUUAGUUGUCGACUUCGUCU   1   ||-||=|*||*||||||||||||| targets:1506   UG-UCGAACAUCAGCUGAAGCAGA   1528 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum transcriptional adapter ADA2b (LOC108457493), mRNA	transcriptional adapter ADA2b(LOC108457493)	coding protein	psRNATarget