Search result

BaseInfo

ncRNA ID	novel_gar_miR543
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr12:49394970-49395082 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029588;SRR1029587
Length	24
Mature sequence(if miRNA)	1 - AUUGGAAAGGGAUACAGAUGAUGU - 24
Stem-loop(if miRNA)	--         G                                         C G   AUUGGAAAG GAUACAGAUGAUGUGGCGUUACUGUUUCAUACAAUCCUUUC C A   ||||||||| ||||||||||||||||||||||||||||||||||||||||| | A   UAAUCUUUC CUAUGUCUACUGCACCGCAGUGACAAAGUAUGUUAGGAAAG G A GA         A                                         A A
Stem-loop sequence	AUUGGAAAGGGAUACAGAUGAUGUGGCGUUACUGUUUCAUACAAUCCUUUCCCGAAAAGAGAAAGGAUUGUAUGAAACAGUGACGCCACGUCAUCUGUAUCACUUUCUAAUAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017758885.1	ncRNA:24   UGUAGUAGACAUAGGGAAAGGUUA   1   ||=||||||||||||||||||||| targets:1637   ACGUCAUCUGUAUCCCUUUCCAAU   1660 Target Full Sequence	0.0	PREDICTED: Gossypium arboreum enolase-like (LOC108459500), mRNA	enolase-like(LOC108459500)	coding protein	psRNATarget
XM_017759563.1	ncRNA:24   UGUAGUAGACAUAGGGAAAGGUUA   1   ||=||||||||||||||||||||| targets:2369   ACGUCAUCUGUAUCCCUUUCCAAU   2392 Target Full Sequence	0.0	PREDICTED: Gossypium arboreum L-type lectin-domain containing receptor kinase IX.1-like (LOC108460187), mRNA	L-type lectin-domain containing receptor kinase IX.1-like(LOC108460187)	coding protein	psRNATarget
XM_017758885.1	ncRNA:24   UGUAGUAGACAUAGGGAAAGGUUA   1   ||=||||||||||||||||=|||| targets:1368   ACGUCAUCUGUAUCCCUUUUCAAU   1391 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum enolase-like (LOC108459500), mRNA	enolase-like(LOC108459500)	coding protein	psRNATarget
XM_017786227.1	ncRNA:24   UGUAGUAGACAUAGGGAAAGGUUA   1   =*|||||=|||*|||||||||||| targets:493   GAAUCAUUUGUCUCCCUUUCCAAU   516 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum myosin-2-like (LOC108483042), transcript variant X4, mRNA	myosin-2-like(LOC108483042)	coding protein	psRNATarget
XM_017786226.1	ncRNA:24   UGUAGUAGACAUAGGGAAAGGUUA   1   =*|||||=|||*|||||||||||| targets:1064   GAAUCAUUUGUCUCCCUUUCCAAU   1087 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum myosin-2-like (LOC108483042), transcript variant X3, mRNA	myosin-2-like(LOC108483042)	coding protein	psRNATarget
XM_017786224.1	ncRNA:24   UGUAGUAGACAUAGGGAAAGGUUA   1   =*|||||=|||*|||||||||||| targets:1124   GAAUCAUUUGUCUCCCUUUCCAAU   1147 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum myosin-2-like (LOC108483042), transcript variant X1, mRNA	myosin-2-like(LOC108483042)	coding protein	psRNATarget
XM_017786225.1	ncRNA:24   UGUAGUAGACAUAGGGAAAGGUUA   1   =*|||||=|||*|||||||||||| targets:1231   GAAUCAUUUGUCUCCCUUUCCAAU   1254 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum myosin-2-like (LOC108483042), transcript variant X2, mRNA	myosin-2-like(LOC108483042)	coding protein	psRNATarget