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BaseInfo

ncRNA ID	ath-miR402
Species	Arabidopsis thaliana
Class	miRNA
Genome position	chr1:29016520-29016828 [+]
Reference genome	TAIR10
Source	miRBase
Length	22
Mature sequence(if miRNA)	67 - UUCGAGGCCUAUUAAACCUCUG - 88
Stem-loop(if miRNA)	CGUGGUA     -    -G   U            U   CCUUU     UUAACCCAUAUUUUC           C    U           ACAUCU   -       --A    -----G   UUUUUCUGAAAUCUUCUUGCCUCAAUUUCCAACAGCAGAUUCAUC        GAUAA GUUU  AGU GCAUAGUGGCAG CUU     GUUUG               AUGAUUCGAGG CUAU AAACCUCUGUU      GCU UUUUGAA   AGUU      UCA                                             U        ||||| ||||  ||| |||||||||||| |||     |||||               ||||||||||| |||| |||||||||||      ||| |||||||   ||||      |||        CUAUU CAAA  UCA CGUAUCAUCGUC GAG     CAAAC               UACUAAGCUCC GAUA UUUGGGGAUAA      CGA AAAGCUU   UCAG      AGA                                             U ----AAA     U    AG   U            U   -----     -------------UA           A    -           AAUUUC   U       CAG    AAUUAA   AGGGUGGAGUAAAAAAGAUAGUUUUUGAUUGCCUAGUAGGUUACU
Stem-loop sequence	CGUGGUAGAUAAGUUUGAGUUGCAUAGUGGCAGUCUUCCUUUGUUUGUUAACCCAUAUUUUCAUGAUUCGAGGCCUAUUAAACCUCUGUUACAUCUGCUUUUUGAAAAGUUGUCAUUUUUCUGAAAUCUUCUUGCCUCAAUUUCCAACAGCAGAUUCAUCUUUCAUUGGAUGAUCCGUUAGUUUUUGAUAGAAAAAAUGAGGUGGGAAGAAAUUAAGACUGACUUCGAAAUAGCCUUUAAAAUAGGGGUUUAUAGACCUCGAAUCAUAUCAAACGAGUCUGCUACUAUGCUACUGAAAACUUUAUCAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001125640.1	ncRNA:22   GUCUCCAAAUUAUCCGGAGCUU   1   |*||||||||||||||||||=| targets:254   CUGAGGUUUAAUAGGCCUCGGA   275 Target Full Sequence	1.5	Arabidopsis thaliana demeter-like protein 3 (DML3), mRNA	demeter-like protein 3(DML3)	coding protein	psRNATarget
AY735663.1	ncRNA:22   GUCUCCAAAUUAUCCGGAGCUU   1   |*||||||||||||||||||=| targets:295   CUGAGGUUUAAUAGGCCUCGGA   316 Target Full Sequence	1.5	Arabidopsis thaliana hypothetical protein AT4G34060 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001342252.1	ncRNA:22   GUCUCCAAAUUAUCCGGAGCUU   1   |*||||||||||||||||||=| targets:354   CUGAGGUUUAAUAGGCCUCGGA   375 Target Full Sequence	1.5	Arabidopsis thaliana demeter-like protein 3 (DML3), mRNA	demeter-like protein 3(DML3)	coding protein	psRNATarget
NM_119567.4	ncRNA:22   GUCUCCAAAUUAUCCGGAGCUU   1   |*||||||||||||||||||=| targets:408   CUGAGGUUUAAUAGGCCUCGGA   429 Target Full Sequence	1.5	Arabidopsis thaliana demeter-like protein 3 (DML3), mRNA	demeter-like protein 3(DML3)	coding protein	psRNATarget
NM_001342250.1	ncRNA:22   GUCUCCAAAUUAUCCGGAGCUU   1   |*||||||||||||||||||=| targets:481   CUGAGGUUUAAUAGGCCUCGGA   502 Target Full Sequence	1.5	Arabidopsis thaliana demeter-like protein 3 (DML3), mRNA	demeter-like protein 3(DML3)	coding protein	psRNATarget
NM_001342251.1	ncRNA:22   GUCUCCAAAUUAUCCGGAGCUU   1   |*||||||||||||||||||=| targets:506   CUGAGGUUUAAUAGGCCUCGGA   527 Target Full Sequence	1.5	Arabidopsis thaliana demeter-like protein 3 (DML3), mRNA	demeter-like protein 3(DML3)	coding protein	psRNATarget

Reference

1	PMID:15258262 "Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis"; Sunkar R, Zhu JK; Plant Cell. 16:2001-2019(2004).
2	PMID:16954541 "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant"; Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC; Genome Res. 16:1276-1288(2006).
3	PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006).