| ncRNA ID | novel_gar_miR540 |
| Species | Gossypium arboreum |
| Class | miRNA |
| Genome position | Chr1:79427922-79428100 [-] |
| Reference genome | Gossypium_arboreum_v1.0 |
| Source | SRR1029588 |
| Length | 24 |
| Mature sequence(if miRNA) | 156 - AAUAAGAGGAUAAUGUACUUCAAC - 179 |
| Stem-loop(if miRNA) |
AA - ---- CUC C C U CUAA CAAAACUGAUCCCAACUAAGUUAAGACCCAGU UAAG AGGAU AAUGUACUUCAACA UCGAA C AUGUCCUC UGCA CAA U |||| ||||| |||||||||||||| ||||| | |||||||| |||| ||| G AUUC UCCUA UUAUAUGAAGUUGU AGUUU G UGCAGGAG AUGU AUA G -- A CUAU ACA A A U ---A AUGAAUAUGGAAUAAGUUAAAUUGAUUAGUUU |
| Stem-loop sequence | AAUAAGAGGAUAAUGUACUUCAACACUCUCGAACCCAUGUCCUCUUGCACUAACAACAAAACUGAUCCCAACUAAGUUAAGACCCAGUUGGUUUGAUUAGUUAAAUUGAAUAAGGUAUAAGUAAUAAUGUAUGAGGACGUAGAUUUGAACAUGUUGAAGUAUAUUUAUCAUCCUACUUA |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_017788022.1 |
|
2.5 | PREDICTED: Gossypium arboreum esterase-like (LOC108484287), mRNA | esterase-like(LOC108484287) | coding protein | psRNATarget |