ncRNA ID |
ath_circ_027478 |
Species |
Arabidopsis thaliana |
Class |
circRNA |
Genome position |
5:16381823-16382954[-] |
Reference genome |
TAIR10 |
Source |
PlantcircBase
|
Method |
NA |
Type |
exonic |
Splice junction sequence |
CCCTGAAGCTTGAATCTTGGGAACCACCAGTAAATGTCTGAGACCCACTGACCGGAACAGAACCAAAGCTTTAGCCACTGACATACTTTGCACCACTGTGACAAGGCTTGCATTCCGCTAAGAAAGGAAGACCGAACAAGCAAACTGATGTGAATAGAGATACCCCAAGACTTAGAAGCACCTTATGAATCTTTCCCTTC |
Tissues |
root, aerial, whole_plant |
Exon boundary |
Yes-Yes |
Splicing signals |
AC-CT |
circRNA sequence |
NA |
Genomic sequence |
CCCTGAAGCTTGAATCTTGGGAACCACCAGTAAATGTCTGAGACCCACTGACCGGAACAGAACCAAAGCTTTAGCCACTGACATACTTTGCACCACTGTGTAAGGTGTAGTGTTGGTCAAAGGATGAAGATCAACATACAATTGCATCTCTGAGCTTGTGATTGCAACATCATCGAAGTTATCTTCTCTCTCAGCTAATTCAACCGGTGTGAACTTTTCCCTAACTTCCCACTCTTCTGTTCTCCTTTTCTCATTCAAGAACCATCTCTTTTTCAGAACTTTCACAAGGTGAGCTCTTAGGATCAGACCATGGAGCTCTGTGCCAGTGTTTTGATCTGCTCCATCCAAGACTGGGAATGCGTTATGCGTTGTGTTCCTTAGTACATCGACTATATTTGCCACTTTTTCTACTCCGTTAAGTGTTACAACCGGAGGCTTAGCGTCGTTAAGCTCACCTACAGTGAGATTCCTCATCCACGGCTCTGGATTTGCTTCCAAGAAAGGTAAGCCCTTAAGATGGAGAATGATCTCGTAGATACTTAGATTGAAGCTGTCACCTACTGTTTTAGCTATCAGAAGCACAAACATTGTAATGGGCAACAAAAGAAGGTTGTTGGTGAGTTCCAGAAATATAACACAGAGTGAAACAGTCATTCTCATTGAACCAGCCATGAGTGAAGCTGCACCAAGAACCGCGTAAAGCCCTTGATCTATGTTTGTGTAAGACCCCATTGCTGTGCCTAGCATCCTACCGTATGCAGAACCCATGAGGATAATCGGTAGGAAGAGACCCGACGGTGTCGCTATACCGAATGTTATAAGACCCAAAATGCAGTAGAGGCCAAAGAATATCCAGAGAGAAACCATGCCAAACTCATTAGGAGTGTTTGAAGAGAAAATGTTTCTGACTGCATCATCATTGGTTGTGAGAAGCAGAGTGGATAGATCGTTGTAATAACCATTTGGACAGTTGAATTGCTTGAAATTTCCTGATCTTCCGTTTGTTGGACATATCTCGTCTATAGAAGGATCACAAGGCTTGCATTCCGCTAAGAAAGGAAGACCGAACAAGCAAACTGATGTGAATAGAGATACCCCAAGACTTAGAAGCACCTTATGAATCTTTCCCTTC |