ncRNA ID | novel_gar_miR535 |
Species | Gossypium arboreum |
Class | miRNA |
Genome position | Chr10:55141249-55141433 [-] |
Reference genome | Gossypium_arboreum_v1.0 |
Source | SRR1029588;SRR1029587 |
Length | 24 |
Mature sequence(if miRNA) | 162 - UGGAUCGUGCUUUGGAUCUGCAGC - 185 |
Stem-loop(if miRNA) |
--                 C       A UG              A       C      A              C  -----U  U    GG C   UGGAUCGUGCUUUGGAU UGCAGCC U  UUAGAGUACAUACA UGGUACU UGAGAU GGGAAACCAUAUUU UU      GG GGAC  U G   ||||||||||||||||| ||||||| |  |||||||||||||| ||||||| |||||| |||||||||||||| ||      || ||||  | A   ACCUAGCACGAAACCUA ACGUCGG A  AAUCUCAUGUAUGU ACCAUGA ACUUUA CCCUUUGGUAUAAA AG      CC CCUG  G U CU                 A       G GU              C       A      C              C  UACAUU  -    AU G |
Stem-loop sequence | UGGAUCGUGCUUUGGAUCUGCAGCCAUUGUUAGAGUACAUACAAUGGUACUCUGAGAUAGGGAAACCAUAUUUCUUUGGUGGACGGUCGAUGGUAGUCCCCUUACAUGACAAAUAUGGUUUCCCCAUUUCAAAGUACCACUGUAUGUACUCUAAUGAGGGCUGCAAAUCCAAAGCACGAUCCAUC |