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BaseInfo

ncRNA ID novel_gar_miR531
Species Gossypium arboreum
Class miRNA
Genome position Chr13:82147655-82147771 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029586;SRR1029588;SRR3180719;SRR3180720;SRR3180721;SRR1029587
Length 21
Mature sequence(if miRNA) 1 - UUCCACAGCUUUCUUGAACUG - 21
Stem-loop(if miRNA) --            C            UUC   UAAUCAGAUCAUUCAUUCAUUCGUUG
  UUCCACAGCUUU UUGAACUGCAAU   AUG                          U
  |||||||||||| ||||||||||||   |||                          C
  AGGGUGUCGAAA AACUUGGCGUUG   UGC                          G
GA            U            --U   AUGAGCAUACAUACGUCGUGGUAGUU
Stem-loop sequence UUCCACAGCUUUCUUGAACUGCAAUUUCAUGUAAUCAGAUCAUUCAUUCAUUCGUUGUCGUUGAUGGUGCUGCAUACAUACGAGUACGUUGUUGCGGUUCAAUAAAGCUGUGGGAAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017763233.1
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  |*||||||||||||-|||||||
targets:418   CCGUUCAAGAAAGCAUGUGGAA   439

3.0 PREDICTED: Gossypium arboreum growth-regulating factor 6-like (LOC108463287), mRNA growth-regulating factor 6-like(LOC108463287) coding protein psRNATarget
XM_017762404.1
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  |*||||||||||||-|||||||
targets:329   CCGUUCAAGAAAGCCUGUGGAA   350

3.0 PREDICTED: Gossypium arboreum growth-regulating factor 4-like (LOC108462455), mRNA growth-regulating factor 4-like(LOC108462455) coding protein psRNATarget
XM_017764713.1
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  |*||||||||||||-|||||||
targets:523   CCGUUCAAGAAAGCCUGUGGAA   544

3.0 PREDICTED: Gossypium arboreum growth-regulating factor 4-like (LOC108464420), mRNA growth-regulating factor 4-like(LOC108464420) coding protein psRNATarget
XM_017788246.1
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  |*||||||||||||-|||||||
targets:519   CCGUUCAAGAAAGCCUGUGGAA   540

3.0 PREDICTED: Gossypium arboreum growth-regulating factor 1-like (LOC108484457), transcript variant X2, mRNA growth-regulating factor 1-like(LOC108484457) coding protein psRNATarget
XM_017788244.1
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  |*||||||||||||-|||||||
targets:517   CCGUUCAAGAAAGCCUGUGGAA   538

3.0 PREDICTED: Gossypium arboreum growth-regulating factor 1-like (LOC108484457), transcript variant X1, mRNA growth-regulating factor 1-like(LOC108484457) coding protein psRNATarget
XM_017791566.1
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  |*||||||||||||-|||||||
targets:510   CCGUUCAAGAAAGCCUGUGGAA   531

3.0 PREDICTED: Gossypium arboreum growth-regulating factor 5 (LOC108487265), transcript variant X2, mRNA growth-regulating factor 5(LOC108487265) coding protein psRNATarget
XM_017791565.1
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  |*||||||||||||-|||||||
targets:510   CCGUUCAAGAAAGCCUGUGGAA   531

3.0 PREDICTED: Gossypium arboreum growth-regulating factor 5 (LOC108487265), transcript variant X1, mRNA growth-regulating factor 5(LOC108487265) coding protein psRNATarget
XM_017756386.1
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  |*||||||||||||-|||||||
targets:711   CCGUUCAAGAAAGCCUGUGGAA   732

3.0 PREDICTED: Gossypium arboreum growth-regulating factor 3-like (LOC108457367), transcript variant X2, mRNA growth-regulating factor 3-like(LOC108457367) coding protein psRNATarget
XM_017756385.1
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  |*||||||||||||-|||||||
targets:714   CCGUUCAAGAAAGCCUGUGGAA   735

3.0 PREDICTED: Gossypium arboreum growth-regulating factor 3-like (LOC108457367), transcript variant X1, mRNA growth-regulating factor 3-like(LOC108457367) coding protein psRNATarget
XM_017756380.1
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  |*||||||||||||-|||||||
targets:931   CCGUUCAAGAAAGCCUGUGGAA   952

3.0 PREDICTED: Gossypium arboreum growth-regulating factor 7-like (LOC108457363), mRNA growth-regulating factor 7-like(LOC108457363) coding protein psRNATarget
XM_017780072.1
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  |*||||||||||||-|||||||
targets:982   CCGUUCAAGAAAGCCUGUGGAA   1003

3.0 PREDICTED: Gossypium arboreum uncharacterized LOC108477531 (LOC108477531), mRNA uncharacterized LOC108477531(LOC108477531) coding protein psRNATarget
XM_017780072.1
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  |*||||||||||||-|||||||
targets:1933   CCGUUCAAGAAAGCCUGUGGAA   1954

3.0 PREDICTED: Gossypium arboreum uncharacterized LOC108477531 (LOC108477531), mRNA uncharacterized LOC108477531(LOC108477531) coding protein psRNATarget
XM_017757211.1
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  **||||||||||||-|||||||
targets:661   GCGUUCAAGAAAGCCUGUGGAA   682

3.0 PREDICTED: Gossypium arboreum growth-regulating factor 9 (LOC108457986), mRNA growth-regulating factor 9(LOC108457986) coding protein psRNATarget
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