ncRNA ID | novel_gar_miR527 |
Species | Gossypium arboreum |
Class | miRNA |
Genome position | Chr12:30893613-30893835 [+] |
Reference genome | Gossypium_arboreum_v1.0 |
Source | SRR1029588 |
Length | 24 |
Mature sequence(if miRNA) | 1 - AGGCGAGAUUUGAUAUUUGGCAAU - 24 |
Stem-loop(if miRNA) |
--   C  G       -    --      U   U    C  GC         C    UU  A        -U    U    AUA    A         CAAAAUUUCACUUAUG  U     AA   AGG GA AUUUGAU AUUU  GGCAAU CGA GAAU GU  CCUAACGUG UGGG  GC AUUUCGCG  UUGC CAAA   AUCG AUAUCACUU                UC UUUAA  U   ||| || ||||||| ||||  |||||| ||| |||| ||  ||||||||| ||||  || ||||||||  |||| ||||   |||| |||||||||                || |||||   UCC CU UAAACUA UAGA  UCGUUA GCU UUUA CG  GGGUUGUGC AUCC  UG UAAGGUGC  AACG GUUU   UAGC UGUAGUGGA                AG AAAUU  C CU   -  A       A    AU      -   C    A  UU         A    CG  C        UU    -    --A    G         ----------------  C     CC |
Stem-loop sequence | AGGCGAGAUUUGAUAUUUGGCAAUUCGAUGAAUCGUGCCCUAACGUGCUGGGUUGCAAUUUCGCGUUUGCUCAAAAUAAUCGAAUAUCACUUCAAAAUUUCACUUAUGUCUUUUAAAAUCCCUUAAACGAAGGUGAUGUGCGAUAUUUGGCAAUUCGUGGAAUCGUGCCCUAACGUGUUGGGUUGCAAUUUCUCGAUUGCUUAAGAUAAUCAAAUAUCCCUUC |