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BaseInfo

ncRNA ID novel_gar_miR527
Species Gossypium arboreum
Class miRNA
Genome position Chr12:30893613-30893835 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029588
Length 24
Mature sequence(if miRNA) 1 - AGGCGAGAUUUGAUAUUUGGCAAU - 24
Stem-loop(if miRNA) --   C  G       -    --      U   U    C  GC         C    UU  A        -U    U    AUA    A         CAAAAUUUCACUUAUG  U     AA
  AGG GA AUUUGAU AUUU  GGCAAU CGA GAAU GU  CCUAACGUG UGGG  GC AUUUCGCG  UUGC CAAA   AUCG AUAUCACUU                UC UUUAA  U
  ||| || ||||||| ||||  |||||| ||| |||| ||  ||||||||| ||||  || ||||||||  |||| ||||   |||| |||||||||                || |||||
  UCC CU UAAACUA UAGA  UCGUUA GCU UUUA CG  GGGUUGUGC AUCC  UG UAAGGUGC  AACG GUUU   UAGC UGUAGUGGA                AG AAAUU  C
CU   -  A       A    AU      -   C    A  UU         A    CG  C        UU    -    --A    G         ----------------  C     CC
Stem-loop sequence AGGCGAGAUUUGAUAUUUGGCAAUUCGAUGAAUCGUGCCCUAACGUGCUGGGUUGCAAUUUCGCGUUUGCUCAAAAUAAUCGAAUAUCACUUCAAAAUUUCACUUAUGUCUUUUAAAAUCCCUUAAACGAAGGUGAUGUGCGAUAUUUGGCAAUUCGUGGAAUCGUGCCCUAACGUGUUGGGUUGCAAUUUCUCGAUUGCUUAAGAUAAUCAAAUAUCCCUUC