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BaseInfo

ncRNA ID novel_gar_miR525
Species Gossypium arboreum
Class miRNA
Genome position Chr10:92100562-92100640 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029588;SRR1029587;SRR1029586
Length 22
Mature sequence(if miRNA) 1 - CGGCUGUGGUUGAUUCGGCAAG - 22
Stem-loop(if miRNA) --C   -  U   U  U            UAUAUCUUGUC
   GGC UG GGU GA UCGGCAAGAAAA           U
   ||| || ||| || ||||||||||||           U
   CCG AC CCA CU AGCCGUUCUUUU           U
UAU   U  -   C  U            UAUUUUUAUUU
Stem-loop sequence CGGCUGUGGUUGAUUCGGCAAGAAAAUAUAUCUUGUCUUUUUUAUUUUUAUUUUUCUUGCCGAUUCCACCCAUGCCUAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017749243.1
ncRNA:22   GAACGGCUUAGUUGGUGUCGGC   1
  ||||||||||||||||||||||
targets:2703   CUUGCCGAAUCAACCACAGCCG   2724

0.0 PREDICTED: Gossypium arboreum zinc finger CCCH domain-containing protein 15-like (LOC108451570), mRNA zinc finger CCCH domain-containing protein 15-like(LOC108451570) coding protein psRNATarget