ncRNA ID | novel_gar_miR523 |
Species | Gossypium arboreum |
Class | miRNA |
Genome position | Chr1:99535514-99535713 [-] |
Reference genome | Gossypium_arboreum_v1.0 |
Source | SRR1029588 |
Length | 24 |
Mature sequence(if miRNA) | 177 - AUGAAACUGUGAUUCUACGUCAUC - 200 |
Stem-loop(if miRNA) |
--              C  C       C   -       C    C             CAAAA       CC           A     AAU  GA      U   AUGAAACUGUGAUU UA GUCAUCC UAU CUUUUUC AAUA GAGGAUGAUAAAU     UUUUCUU  UGAUUUUUAAC UUUUU   UG  UUUGAA U   |||||||||||||| || ||||||| ||| ||||||| |||| |||||||||||||     |||||||  ||||||||||| |||||   ||  |||||| U   UACUUUGACACUAA AU CAGUAGG AUA GGAAAAG UUAU CUCUUACUGUUUA     AAAAGGA  AUUAAAAAUUG AAAAA   AC  GGAUUU U UA              A  A       A   A       -    C             UUCUA       AU           -     ---  -A      U |
Stem-loop sequence | AUGAAACUGUGAUUCUACGUCAUCCCUAUCUUUUUCCAAUACGAGGAUGAUAAAUCAAAAUUUUCUUCCUGAUUUUUAACAUUUUUAAUUGGAUUUGAAUUUUUUUUAGGACAAAAAAGUUAAAAAUUAUAAGGAAAAAUCUUAUUUGUCAUUCUCCUAUUGAAAAGGAAUAAGGAUGACAUAAAAUCACAGUUUCAUAU |