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BaseInfo

ncRNA ID	novel_gar_miR507
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr12:33330358-33330446 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029588;SRR3180719;SRR1029586;SRR1029587
Length	22
Mature sequence(if miRNA)	1 - AGAAUCUUGAUGAUGCUGCAUU - 22
Stem-loop(if miRNA)	--                   A  U  -A CG            A   UGUAGCAUCAUCAAGAUUC CA GC  A  UUGUAUGUAUGU U   ||||||||||||||||||| || ||  |  ||||||||||||   ACGUCGUAGUAGUUCUAAG GU UG  U  GAUAUGUAUAUA A UU                   A  C  GG UU            U
Stem-loop sequence	UGUAGCAUCAUCAAGAUUCACAUGCAACGUUGUAUGUAUGUAUAUAUAUAUGUAUAGUUUGGGUCUGAGAAUCUUGAUGAUGCUGCAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017765194.1	ncRNA:22   UUACGUCGUAGUAGUUCUAAGA   1   |=|||||||||||||=|||||| targets:1560   AGUGCAGCAUCAUCAGGAUUCU   1581 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum floral homeotic protein APETALA 2-like (LOC108464908), mRNA	floral homeotic protein APETALA 2-like(LOC108464908)	coding protein	psRNATarget
XM_017761102.1	ncRNA:22   UUACGUCGUAGUAGUUCUAAGA   1   *||||||||||||||=|||||| targets:1493   CAUGCAGCAUCAUCAGGAUUCU   1514 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum ethylene-responsive transcription factor RAP2-7-like (LOC108461300), transcript variant X2, mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC108461300)	coding protein	psRNATarget
XM_017761101.1	ncRNA:22   UUACGUCGUAGUAGUUCUAAGA   1   *||||||||||||||=|||||| targets:1500   CAUGCAGCAUCAUCAGGAUUCU   1521 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum ethylene-responsive transcription factor RAP2-7-like (LOC108461300), transcript variant X1, mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC108461300)	coding protein	psRNATarget
XM_017761103.1	ncRNA:22   UUACGUCGUAGUAGUUCUAAGA   1   *||||||||||||||=|||||| targets:1546   CAUGCAGCAUCAUCAGGAUUCU   1567 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum ethylene-responsive transcription factor RAP2-7-like (LOC108461300), transcript variant X3, mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC108461300)	coding protein	psRNATarget
XM_017748513.1	ncRNA:22   UUACGUCGUAGUAGUUCUAAGA   1   |*|||||||||||||=|||||| targets:1629   ACUGCAGCAUCAUCAGGAUUCU   1650 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum ethylene-responsive transcription factor RAP2-7-like (LOC108450753), transcript variant X3, mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC108450753)	coding protein	psRNATarget
XM_017748512.1	ncRNA:22   UUACGUCGUAGUAGUUCUAAGA   1   |*|||||||||||||=|||||| targets:1695   ACUGCAGCAUCAUCAGGAUUCU   1716 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum ethylene-responsive transcription factor RAP2-7-like (LOC108450753), transcript variant X2, mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC108450753)	coding protein	psRNATarget
XM_017748511.1	ncRNA:22   UUACGUCGUAGUAGUUCUAAGA   1   |*|||||||||||||=|||||| targets:1740   ACUGCAGCAUCAUCAGGAUUCU   1761 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum ethylene-responsive transcription factor RAP2-7-like (LOC108450753), transcript variant X1, mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC108450753)	coding protein	psRNATarget
XM_017783489.1	ncRNA:22   UUACGUCGUAGUAGUUCUAAGA   1   =*|||||||||||||=|||||| targets:1638   GCUGCAGCAUCAUCAGGAUUCU   1659 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum ethylene-responsive transcription factor RAP2-7-like (LOC108480474), transcript variant X1, mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC108480474)	coding protein	psRNATarget
XM_017763509.1	ncRNA:22   UUACGUCGUAGUAGUUCUAAGA   1   ==|||||||||||||=|||||* targets:1695   GGUGCAGCAUCAUCAGGAUUCC   1716 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum floral homeotic protein APETALA 2-like (LOC108463584), mRNA	floral homeotic protein APETALA 2-like(LOC108463584)	coding protein	psRNATarget
XM_017782356.1	ncRNA:22   UUACGUCGUAGUAGUUCUAAGA   1   =|*||||*||*||||||||||| targets:734   GACGCAGGAUGAUCAAGAUUCU   755 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like (LOC108479639), mRNA	serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like(LOC108479639)	coding protein	psRNATarget