Search result

BaseInfo

ncRNA ID	novel_gar_miR498
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr13:66923538-66923618 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029586
Length	24
Mature sequence(if miRNA)	58 - AUUUUAACGGAAUGACCUGUUUGC - 81
Stem-loop(if miRNA)	--    U A       U          AC  CU    C  C   AAAC G UCAUUUU GUUAAAAUUU  AU  AUUU UG U   |||| | ||||||| ||||||||||  ||  |||| ||   UUUG C AGUAAGG CAAUUUUAAA  UA  UAAA AU G CG    U C       -          AA  AU    A  U
Stem-loop sequence	AAACUGAUCAUUUUUGUUAAAAUUUACAUCUAUUUCUGCUGUUAAAAAUUAAUAAAAAUUUUAACGGAAUGACCUGUUUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017786407.1	ncRNA:24   CGUUUGUCCAGUAAGGCAAUUUUA   1   |=||||*||||||||||||||||* targets:1469   GUAAACUGGUCAUUCCGUUAAAAA   1492 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum serine acetyltransferase 4-like (LOC108483085), transcript variant X2, mRNA	serine acetyltransferase 4-like(LOC108483085)	coding protein	psRNATarget
XM_017786487.1	ncRNA:24   CGUUUGUCCAGUAAGGCAAUUUUA   1   |=||||*||||||||||||||||* targets:1477   GUAAACUGGUCAUUCCGUUAAAAA   1500 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum serine acetyltransferase 4-like (LOC108483085), transcript variant X3, mRNA	serine acetyltransferase 4-like(LOC108483085)	coding protein	psRNATarget
XM_017786327.1	ncRNA:24   CGUUUGUCCAGUAAGGCAAUUUUA   1   |=||||*||||||||||||||||* targets:1712   GUAAACUGGUCAUUCCGUUAAAAA   1735 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum serine acetyltransferase 4-like (LOC108483085), transcript variant X1, mRNA	serine acetyltransferase 4-like(LOC108483085)	coding protein	psRNATarget