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BaseInfo

ncRNA ID	novel_gar_miR493
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr12:22026343-22026511 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029588
Length	23
Mature sequence(if miRNA)	147 - AGAGAGAGAAGUAGAAGAGAAUA - 169
Stem-loop(if miRNA)	--     C   C                C          C  U        CU  C  -UC              AAAUA    A   UUCUC UCU CUUCUCUCUCUGUUUU CUCCCUUCUC AU UCUUUUAA  UA UU   UUUAUGUUUUCCAU     UAAA A   ||||| ||| |||||||||||||||| |||||||||| || ||||||||  || ||   ||||||||||||||     |||| A   AAGAG AGA GAAGAGAGAGAUAAAA GAGGGAAGAG UA AGAAAAUU  AU AA   AAAUACAAAAGGUA     AUUU G AU     A   U                A          A  U        CU  C  CAA              -AACA    U
Stem-loop sequence	UUCUCCUCUCCUUCUCUCUCUGUUUUCCUCCCUUCUCCAUUUCUUUUAACUUACUUUCUUUAUGUUUUCCAUAAAUAUAAAAAAGUUUUAACAAAUGGAAAACAUAAAAACAACUAUCUUAAAAGAUAUAGAGAAGGGAGAAAAAUAGAGAGAGAAGUAGAAGAGAAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017786861.1	ncRNA:23   AUAAGAGAAGAUGAAGAGAGAGA   1   |*|||||||=|||||||=||||| targets:95   UUUUCUCUUUUACUUCUUUCUCU   117 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum zinc transporter 11-like (LOC108483455), transcript variant X1, mRNA	zinc transporter 11-like(LOC108483455)	coding protein	psRNATarget
XM_017786862.1	ncRNA:23   AUAAGAGAAGAUGAAGAGAGAGA   1   |*|||||||=|||||||=||||| targets:99   UUUUCUCUUUUACUUCUUUCUCU   121 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum zinc transporter 11-like (LOC108483455), transcript variant X2, mRNA	zinc transporter 11-like(LOC108483455)	coding protein	psRNATarget
XM_017772510.1	ncRNA:23   AUAAGAGAAGAUGAAGAGAGAGA   1   *|*||||||=||=|||||||||| targets:335   CAGUCUCUUUUAUUUCUCUCUCU   357 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108470968 (LOC108470968), mRNA	uncharacterized LOC108470968(LOC108470968)	coding protein	psRNATarget