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BaseInfo

ncRNA ID novel_gar_miR486
Species Gossypium arboreum
Class miRNA
Genome position Chr12:90601619-90601836 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029588
Length 23
Mature sequence(if miRNA) 1 - AGAGAGAAGUAGAAGAGAAUGGG - 23
Stem-loop(if miRNA) --                  C  C           A   ----A      ---CC   A         A       CCAC                ACAAGCUCACCUC   CG
  CAUUCUCUUCUGCUUCUC CU UGUUUUUCUCC UUC     UUUCUU     AAC UAGUUUUUU AUAUUUU    UUGUUAAAACUAGUCU             ACU  A
  |||||||||||||||||| || ||||||||||| |||     ||||||     ||| ||||||||| |||||||    ||||||||||||||||             |||
  GUAAGAGAAGAUGAAGAG GA AUAAAAGGAGG AAG     AAAGAA     UUG AUCAAAAAG UAUAAAA    AACAAUUUUGAUUAGA             UGA  A
GG                  A  A           G   AGAUA      AUUAA   C         A       AAUA                ---GAUAUAAAAA   AA
Stem-loop sequence CAUUCUCUUCUGCUUCUCCCUCUGUUUUUCUCCAUUCAUUUCUUCCAACAUAGUUUUUUAAUAUUUUCCACUUGUUAAAACUAGUCUACAAGCUCACCUCACUCGAAAAAGUAAAAAUAUAGAGAUUAGUUUUAACAAAUAAAAAAUAUAGAAAAACUACGUUAAUUAAAGAAAAUAGAGAAGGGAGGAAAAUAAAGAGAGAAGUAGAAGAGAAUGGG