| ncRNA ID | novel_gar_miR478 |
| Species | Gossypium arboreum |
| Class | miRNA |
| Genome position | Chr12:17599642-17599793 [+] |
| Reference genome | Gossypium_arboreum_v1.0 |
| Source | SRR1029588 |
| Length | 24 |
| Mature sequence(if miRNA) | 1 - UGGAUUGCCAUAUAGAUGACGCAU - 24 |
| Stem-loop(if miRNA) |
-- A CG A A AAU UAU UU U UGGAUUGCCAUAU GAUGA CAU AACAUUUAAUUAAUUUUUUAAAA UUUAAAAA AUUUU AA UUA U ||||||||||||| ||||| ||| ||||||||||||||||||||||| |||||||| ||||| || ||| AUUUAAUGGUAUA CUGCU GUA UUGUAAAUUAAUUAAAAAAUUUU AAAUUUUU UAAGG UU AAU U GU C AU G - --- UUU UU U |
| Stem-loop sequence | UGGAUUGCCAUAUAGAUGACGCAUAAACAUUUAAUUAAUUUUUUAAAAAUUUAAAAAAAUAUUUUUAUAAUUUUAUUUUUAAUUUUUUUGGAAUUUUUUAAAUUUUAAAAAAUUAAUUAAAUGUUGAUGUAUCGUCCAUAUGGUAAUUUAUG |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_017772713.1 |
|
2.0 | PREDICTED: Gossypium arboreum protein PNS1-like (LOC108471124), mRNA | protein PNS1-like(LOC108471124) | coding protein | psRNATarget | |||||||||
| XM_017762728.1 |
|
2.5 | PREDICTED: Gossypium arboreum DUF21 domain-containing protein At2g14520-like (LOC108462826), transcript variant X1, mRNA | DUF21 domain-containing protein At2g14520-like(LOC108462826) | coding protein | psRNATarget |