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BaseInfo

ncRNA ID novel_gar_miR473
Species Gossypium arboreum
Class miRNA
Genome position Chr10:71661056-71661130 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029588
Length 24
Mature sequence(if miRNA) 1 - UACGAGUCAAUGUGGAGAUUUGUG - 24
Stem-loop(if miRNA) --     G    G  A   C    AUGGA UCGAAAAAA
  CAAAU UUUA AU GGC CGUA     C         G
  ||||| |||| || ||| ||||     |
  GUUUA AGGU UA CUG GCAU     A         A
GU     G    G  A   A    ---AA AAAGUAUAG
Stem-loop sequence CAAAUGUUUAGAUAGGCCCGUAAUGGACUCGAAAAAAGAGAUAUGAAAAAAUACGAGUCAAUGUGGAGAUUUGUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017747733.1
ncRNA:24   GU---GUUUAGAGGUGUAACUGAGCAU   1
  ||---||=|||||||||||||=||||*
targets:1059   CAUUCCAGAUCUCCACAUUGAUUCGUU   1085

2.5 PREDICTED: Gossypium arboreum uncharacterized LOC108450211 (LOC108450211), mRNA uncharacterized LOC108450211(LOC108450211) coding protein psRNATarget