Search result

BaseInfo

ncRNA ID	novel_gar_miR471
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr12:121861518-121861594 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029588;SRR3180715;SRR1029586;SRR3180719;SRR3180721;SRR1029587
Length	21
Mature sequence(if miRNA)	1 - UCGGACCAGGCUUCAUUCCUC - 21
Stem-loop(if miRNA)	--      UU G    CU            AAAU  AG   GGAAUG  G CUGG  CGAAGCUUAAAC    AC  C   ||||||  | ||||  ||||||||||||    ||  U   CCUUAC  C GACC  GCUUUGAAUUUG    UG  U CU      UU G    AG            GUUU  GU
Stem-loop sequence	GGAAUGUUGGCUGGCUCGAAGCUUAAACAAAUACAGCUUUGGUUUUGGUUUAAGUUUCGGACCAGGCUUCAUUCCUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017751100.1	ncRNA:21   CUCCUUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:1772   CUGGAAUGAAGCCUGGUCCGG   1792 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum homeobox-leucine zipper protein ATHB-15 (LOC108453155), mRNA	homeobox-leucine zipper protein ATHB-15(LOC108453155)	coding protein	psRNATarget
XM_017768339.1	ncRNA:21   CUCCUUACUUCGGACCAGGCU   1   **||=|||||||||||||||= targets:773   CUGGGAUGAAGCCUGGUCCGG   793 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum homeobox-leucine zipper protein REVOLUTA (LOC108467628), mRNA	homeobox-leucine zipper protein REVOLUTA(LOC108467628)	coding protein	psRNATarget
XM_017788432.1	ncRNA:21   CUCCUUACUUCGGACCAGGCU   1   **||=|||||||||||||||= targets:875   CUGGGAUGAAGCCUGGUCCGG   895 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum homeobox-leucine zipper protein ATHB-8-like (LOC108484566), mRNA	homeobox-leucine zipper protein ATHB-8-like(LOC108484566)	coding protein	psRNATarget
XM_017787622.1	ncRNA:21   CUCCUUACUUCGGACCAGGCU   1   **||=|||||||||||||||= targets:1015   CUGGGAUGAAGCCUGGUCCGG   1035 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum homeobox-leucine zipper protein ATHB-8-like (LOC108484018), transcript variant X2, mRNA	homeobox-leucine zipper protein ATHB-8-like(LOC108484018)	coding protein	psRNATarget
XM_017787255.1	ncRNA:21   CUCCUUACUUCGGACCAGGCU   1   **||=|||||||||||||||= targets:1256   CUGGGAUGAAGCCUGGUCCGG   1276 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum homeobox-leucine zipper protein REVOLUTA-like (LOC108483704), transcript variant X3, mRNA	homeobox-leucine zipper protein REVOLUTA-like(LOC108483704)	coding protein	psRNATarget
XM_017787621.1	ncRNA:21   CUCCUUACUUCGGACCAGGCU   1   **||=|||||||||||||||= targets:1014   CUGGGAUGAAGCCUGGUCCGG   1034 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum homeobox-leucine zipper protein ATHB-8-like (LOC108484018), transcript variant X1, mRNA	homeobox-leucine zipper protein ATHB-8-like(LOC108484018)	coding protein	psRNATarget
XM_017787254.1	ncRNA:21   CUCCUUACUUCGGACCAGGCU   1   **||=|||||||||||||||= targets:1257   CUGGGAUGAAGCCUGGUCCGG   1277 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum homeobox-leucine zipper protein REVOLUTA-like (LOC108483704), transcript variant X2, mRNA	homeobox-leucine zipper protein REVOLUTA-like(LOC108483704)	coding protein	psRNATarget
XM_017787253.1	ncRNA:21   CUCCUUACUUCGGACCAGGCU   1   **||=|||||||||||||||= targets:1257   CUGGGAUGAAGCCUGGUCCGG   1277 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum homeobox-leucine zipper protein REVOLUTA-like (LOC108483704), transcript variant X1, mRNA	homeobox-leucine zipper protein REVOLUTA-like(LOC108483704)	coding protein	psRNATarget
XM_017759163.1	ncRNA:21   CUCCUUACUUCGGACCAGGCU   1   **||=|||||||||||||||= targets:962   CUGGGAUGAAGCCUGGUCCGG   982 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum homeobox-leucine zipper protein ATHB-8-like (LOC108459756), mRNA	homeobox-leucine zipper protein ATHB-8-like(LOC108459756)	coding protein	psRNATarget
XM_017747512.1	ncRNA:21   CUCCUUACUUCGGACCAGGCU   1   **||=|||||||||||||||= targets:1434   CUGGGAUGAAGCCUGGUCCGG   1454 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum homeobox-leucine zipper protein REVOLUTA-like (LOC108450068), mRNA	homeobox-leucine zipper protein REVOLUTA-like(LOC108450068)	coding protein	psRNATarget