Search result

BaseInfo

ncRNA ID	novel_gar_miR466
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr12:14647749-14647869 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029588
Length	24
Mature sequence(if miRNA)	98 - AGGAUAAGAGUAUUGAUGUGGCAU - 121
Stem-loop(if miRNA)	--                      A         A            ---UU    U    UA   GCCACAUCAAUAUUUUUAUCUU AAUUUCAGA UUUUAUCCUAAA     UUAG AUUU  A   |||||||||||||||||||||| ||||||||| ||||||||||||     |||| ||||   CGGUGUAGUUAUGAGAAUAGGA UUAAAGUCU AAAAUAGGAUUU     AGUU UAAG  U UA                      C         -            UUUUU    -    UU
Stem-loop sequence	GCCACAUCAAUAUUUUUAUCUUAAAUUUCAGAAUUUUAUCCUAAAUUUUAGUAUUUUAAUUUGAAUUUGAUUUUUUUUAGGAUAAAAUCUGAAAUUCAGGAUAAGAGUAUUGAUGUGGCAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017759563.1	ncRNA:24   UACGGUGUAGUUAUGAGAAUAGGA   1   |||=||*||||*|||||||||||| targets:2399   AUGUCAAAUCAUUACUCUUAUCCU   2422 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum L-type lectin-domain containing receptor kinase IX.1-like (LOC108460187), mRNA	L-type lectin-domain containing receptor kinase IX.1-like(LOC108460187)	coding protein	psRNATarget
XM_017778904.1	ncRNA:24   UA---CGGUGUAGUUAUGAGAAUAGGA   1   ||---||||*||||||||||||*|||| targets:2   AUCUCGCCAGAUCAAUACUCUUUUCCU   28 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108476634 (LOC108476634), transcript variant X1, mRNA	uncharacterized LOC108476634(LOC108476634)	coding protein	psRNATarget
XM_017778905.1	ncRNA:24   UA---CGGUGUAGUUAUGAGAAUAGGA   1   ||---||||*||||||||||||*|||| targets:2   AUCUCGCCAGAUCAAUACUCUUUUCCU   28 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108476634 (LOC108476634), transcript variant X2, mRNA	uncharacterized LOC108476634(LOC108476634)	coding protein	psRNATarget