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BaseInfo

ncRNA ID novel_gar_miR461
Species Gossypium arboreum
Class miRNA
Genome position Chr12:137532033-137532082 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029588
Length 24
Mature sequence(if miRNA) 27 - CAGAUUGGGGAUGGUAUGCUGAGG - 50
Stem-loop(if miRNA) --     UA    -    U     A
  UCGGU  ACUA CCUC GUCUG C
  |||||  |||| |||| ||||| C
  AGUCG  UGGU GGGG UAGAC A
GG     UA    A    U     U
Stem-loop sequence UCGGUUAACUACCUCUGUCUGACCAUCAGAUUGGGGAUGGUAUGCUGAGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017792098.1
ncRNA:24   GGAGUCGUAUGGUAGGGGUUAGAC   1
  |=|=||||||||||||||||||||
targets:1244   CUUUAGCAUACCAUCCCCAAUCUG   1267

0.0 PREDICTED: Gossypium arboreum uncharacterized LOC108487730 (LOC108487730), mRNA uncharacterized LOC108487730(LOC108487730) coding protein psRNATarget