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BaseInfo

ncRNA ID	novel_gar_miR458
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr1:115744707-115744801 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029588;SRR1029588;SRR3180715;SRR3180720;SRR3180721;SRR1029586;SRR1029587
Length	21
Mature sequence(if miRNA)	75 - UGCCUGGCUCCCUGAAUGCCA - 95
Stem-loop(if miRNA)	--      GC   -    A         U   U  U     AUA    GU   UGCCUG  UCC CUGA UGCCAACUA GAA GG GUCAA   AGCG  G   ||||||  ||| |||| ||||||||| ||| || |||||   ||||   ACGGAC  AGG GACU ACGGUUGAU CUU CC CGGUU   UUGU  U GG      UC   A    -         C   U  -     --G    GU
Stem-loop sequence	UGCCUGGCUCCCUGAAUGCCAACUAUGAAUGGUGUCAAAUAAGCGGUGUUGUGUUGUUGGCCCUUUCCUAGUUGGCAUCAGAGGACUCAGGCAGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017788312.1	ncRNA:21   ACCGUAAGUCCCUCGGUCCGU   1   ||||||*|||||||||||||| targets:1347   UGGCAUGCAGGGAGCCAGGCA   1367 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum auxin response factor 17-like (LOC108484503), transcript variant X2, mRNA	auxin response factor 17-like(LOC108484503)	coding protein	psRNATarget
XM_017788311.1	ncRNA:21   ACCGUAAGUCCCUCGGUCCGU   1   ||||||*|||||||||||||| targets:1345   UGGCAUGCAGGGAGCCAGGCA   1365 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum auxin response factor 17-like (LOC108484503), transcript variant X1, mRNA	auxin response factor 17-like(LOC108484503)	coding protein	psRNATarget
XM_017747517.1	ncRNA:21   ACCGUAAGUCCCUCGGUCCGU   1   ||||||*|||||||||||||| targets:1552   UGGCAUGCAGGGAGCCAGGCA   1572 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum auxin response factor 17-like (LOC108450073), mRNA	auxin response factor 17-like(LOC108450073)	coding protein	psRNATarget
XM_017752219.1	ncRNA:21   ACCGUAAGUCCCUCGGUCCGU   1   ||||||*|||||||||||||| targets:2255   UGGCAUGCAGGGAGCCAGGCA   2275 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum auxin response factor 18-like (LOC108453867), mRNA	auxin response factor 18-like(LOC108453867)	coding protein	psRNATarget
XM_017783055.1	ncRNA:21   ACCGUAAGUCCCUCGGUCCGU   1   *|||||*|||||||||||||| targets:1552   AGGCAUACAGGGAGCCAGGCA   1572 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum auxin response factor 18-like (LOC108480158), transcript variant X3, mRNA	auxin response factor 18-like(LOC108480158)	coding protein	psRNATarget
XM_017783054.1	ncRNA:21   ACCGUAAGUCCCUCGGUCCGU   1   *|||||*|||||||||||||| targets:1528   AGGCAUACAGGGAGCCAGGCA   1548 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum auxin response factor 18-like (LOC108480158), transcript variant X2, mRNA	auxin response factor 18-like(LOC108480158)	coding protein	psRNATarget
XM_017783053.1	ncRNA:21   ACCGUAAGUCCCUCGGUCCGU   1   *|||||*|||||||||||||| targets:1545   AGGCAUACAGGGAGCCAGGCA   1565 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum auxin response factor 18-like (LOC108480158), transcript variant X1, mRNA	auxin response factor 18-like(LOC108480158)	coding protein	psRNATarget
XM_017794157.1	ncRNA:21   ACCGUAAGUCCCUCGGUCCGU   1   *|||||*|||||||||||||| targets:1508   AGGCAUACAGGGAGCCAGGCA   1528 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum auxin response factor 18-like (LOC108489534), transcript variant X1, mRNA	auxin response factor 18-like(LOC108489534)	coding protein	psRNATarget
XM_017759730.1	ncRNA:21   ACCGUAAGUCCCUCGGUCCGU   1   *|||||*|||||||||||||| targets:1705   AGGCAUACAGGGAGCCAGGCA   1725 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum auxin response factor 18-like (LOC108460289), mRNA	auxin response factor 18-like(LOC108460289)	coding protein	psRNATarget
XM_017794158.1	ncRNA:21   ACCGUAAGUCCCUCGGUCCGU   1   *|||||*|||||||||||||| targets:1665   AGGCAUACAGGGAGCCAGGCA   1685 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum auxin response factor 18-like (LOC108489534), transcript variant X2, mRNA	auxin response factor 18-like(LOC108489534)	coding protein	psRNATarget
XM_017747691.1	ncRNA:21   ACCGUAAGUCCCUCGGUCCGU   1   *|||||*|||||||||||||| targets:2267   AGGCAUACAGGGAGCCAGGCA   2287 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum auxin response factor 10-like (LOC108450182), mRNA	auxin response factor 10-like(LOC108450182)	coding protein	psRNATarget
XM_017790201.1	ncRNA:21   ACCGUAAGUCCCUCGGUCCGU   1   *||*||*|||||||||||||| targets:1393   AGGGAUACAGGGAGCCAGGCA   1413 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum auxin response factor 10-like (LOC108486248), mRNA	auxin response factor 10-like(LOC108486248)	coding protein	psRNATarget