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BaseInfo

ncRNA ID ath-miR4228-3p
Species Arabidopsis thaliana
Class miRNA
Genome position chr1:28889375-28889532 [+]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 107 - UCGGAUGCGAAACGGUGGUGU - 127
Stem-loop(if miRNA) ---------     UGUUGUUUUA      --UAG           GU        C       A   -UCACAC   CACACUUCCAC
         CGGCG          ACCUAA     CCUUGAACGCC  CGUUUCGU UCCGACG CAU       GCG           C
         |||||          ||||||     |||||||||||  |||||||| ||||||| |||       |||           C
         GCCGU          UGGAUU     GGGACUUGUGG  GCAAAGCG AGGCUGC GUG       UGC           U
CCAUUUUAG     ----------      UUUUA           UG        U       -   CACACUC   CUAUCUACCAU
Stem-loop sequence CGGCGUGUUGUUUUAACCUAAUAGCCUUGAACGCCGUCGUUUCGUCUCCGACGACAUUCACACGCGCACACUUCCACCCUUACCAUCUAUCCGUCUCACACGUGCGUCGGAUGCGAAACGGUGGUGUUCAGGGAUUUUUUAGGUUGCCGGAUUUUACC

Reference

1 PMID:20407023
"Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus";
Ma Z, Coruh C, Axtell MJ;
Plant Cell. 22:1090-1103(2010).