ncRNA ID | ath-miR4228-3p |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | chr1:28889375-28889532 [+] |
Reference genome | TAIR10 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 107 - UCGGAUGCGAAACGGUGGUGU - 127 |
Stem-loop(if miRNA) |
---------     UGUUGUUUUA      --UAG           GU        C       A   -UCACAC   CACACUUCCAC          CGGCG          ACCUAA     CCUUGAACGCC  CGUUUCGU UCCGACG CAU       GCG           C          |||||          ||||||     |||||||||||  |||||||| ||||||| |||       |||           C          GCCGU          UGGAUU     GGGACUUGUGG  GCAAAGCG AGGCUGC GUG       UGC           U CCAUUUUAG     ----------      UUUUA           UG        U       -   CACACUC   CUAUCUACCAU |
Stem-loop sequence | CGGCGUGUUGUUUUAACCUAAUAGCCUUGAACGCCGUCGUUUCGUCUCCGACGACAUUCACACGCGCACACUUCCACCCUUACCAUCUAUCCGUCUCACACGUGCGUCGGAUGCGAAACGGUGGUGUUCAGGGAUUUUUUAGGUUGCCGGAUUUUACC |
1 | PMID:20407023
"Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus"; Ma Z, Coruh C, Axtell MJ; Plant Cell. 22:1090-1103(2010). |