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BaseInfo

ncRNA ID	novel_gar_miR442
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr11:80638059-80638236 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029588
Length	24
Mature sequence(if miRNA)	155 - AACGGAGUUUAACGGUAGAGUGAC - 178
Stem-loop(if miRNA)	--              U             CUA  AGC                 C              AAC       ---C   CCAG   CACUCUACCGUUAA CUCUGUUACCUCC   AC   AGUCCUACGUGGUAGUC AAAUGGGUUUUAAA   CUAAUUU    GUC    C   |||||||||||||| |||||||||||||   ||   ||||||||||||||||| ||||||||||||||   |||||||    |||   GUGAGAUGGCAAUU GAGGCAAUGGAGG   UG   UCAGGAUGCACCGUCAG UUUACUCAAAAUUU   GGUUGAA    CAG    A CA              U             CAC  CUA                 A              -AC       UCUA   AUAA
Stem-loop sequence	CACUCUACCGUUAAUCUCUGUUACCUCCCUAACAGCAGUCCUACGUGGUAGUCCAAAUGGGUUUUAAAAACCUAAUUUCGUCCCAGCAAAUAGACAUCUAAGUUGGCAUUUAAAACUCAUUUAGACUGCCACGUAGGACUAUCGUCACGGAGGUAACGGAGUUUAACGGUAGAGUGAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017753104.1	ncRNA:24   CAGUGAGAUGGCAAUUUGAGGCAA   1   |||||*||||=||||||||||||| targets:1782   GUCACACUACUGUUAAACUCCGUU   1805 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum A-kinase anchor protein 7-like (LOC108454597), transcript variant X2, mRNA	A-kinase anchor protein 7-like(LOC108454597)	coding protein	psRNATarget
XM_017753103.1	ncRNA:24   CAGUGAGAUGGCAAUUUGAGGCAA   1   |||||*||||=||||||||||||| targets:1727   GUCACACUACUGUUAAACUCCGUU   1750 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum A-kinase anchor protein 7-like (LOC108454597), transcript variant X1, mRNA	A-kinase anchor protein 7-like(LOC108454597)	coding protein	psRNATarget
XM_017753108.1	ncRNA:24   CAGUGAGAUGGCAAUUUGAGGCAA   1   |||||*||||=||||||||||||| targets:1697   GUCACACUACUGUUAAACUCCGUU   1720 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum A-kinase anchor protein 7-like (LOC108454597), transcript variant X5, mRNA	A-kinase anchor protein 7-like(LOC108454597)	coding protein	psRNATarget
XM_017753107.1	ncRNA:24   CAGUGAGAUGGCAAUUUGAGGCAA   1   |||||*||||=||||||||||||| targets:1679   GUCACACUACUGUUAAACUCCGUU   1702 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum A-kinase anchor protein 7-like (LOC108454597), transcript variant X4, mRNA	A-kinase anchor protein 7-like(LOC108454597)	coding protein	psRNATarget
XM_017753105.1	ncRNA:24   CAGUGAGAUGGCAAUUUGAGGCAA   1   |||||*||||=||||||||||||| targets:1622   GUCACACUACUGUUAAACUCCGUU   1645 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum A-kinase anchor protein 7-like (LOC108454597), transcript variant X3, mRNA	A-kinase anchor protein 7-like(LOC108454597)	coding protein	psRNATarget
XM_017753109.1	ncRNA:24   CAGUGAGAUGGCAAUUUGAGGCAA   1   |||||*||||=||||||||||||| targets:1592   GUCACACUACUGUUAAACUCCGUU   1615 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum A-kinase anchor protein 7-like (LOC108454597), transcript variant X6, mRNA	A-kinase anchor protein 7-like(LOC108454597)	coding protein	psRNATarget
XM_017753110.1	ncRNA:24   CAGUGAGAUGGCAAUUUGAGGCAA   1   |||||*||||=||||||||||||| targets:1589   GUCACACUACUGUUAAACUCCGUU   1612 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum A-kinase anchor protein 7-like (LOC108454597), transcript variant X7, mRNA	A-kinase anchor protein 7-like(LOC108454597)	coding protein	psRNATarget