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BaseInfo

ncRNA ID	novel_gar_miR439
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr1:134874697-134874786 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029588;SRR1029588;SRR3180715;SRR3180719;SRR3180720;SRR3180720;SRR3180721;SRR959748;SRR959750;SRR1029586;SRR1029587
Length	21
Mature sequence(if miRNA)	1 - UGAUUGAGCCGUGCCAAUAUC - 21
Stem-loop(if miRNA)	--       C       C      ----    -AACAU      CAC   UAUUGGC UGGUUCA UCAGAC    AUGA      AAAAGA   U   ||||||| ||||||| ||||||    ||||      ||||||   U   AUAACCG GCCGAGU AGUCUG    UAUU      UUUUCU   U CU       U       U      GUUU    AUUAUU      CUC
Stem-loop sequence	UAUUGGCCUGGUUCACUCAGACAUGAAACAUAAAAGACACUUUCUCUCUUUUUUAUUAUUAUUUUGGUCUGAUUGAGCCGUGCCAAUAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017781712.1	ncRNA:21   CUAUAACCGUGCCGAGUUAGU   1   |||||||||=||||||||||| targets:1269   GAUAUUGGCGCGGCUCAAUCA   1289 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum scarecrow-like protein 6 (LOC108479239), mRNA	scarecrow-like protein 6(LOC108479239)	coding protein	psRNATarget
XM_017787403.1	ncRNA:21   CUAUAACCGUGCCGAGUUAGU   1   |||||||||=||||||||||| targets:1272   GAUAUUGGCGCGGCUCAAUCA   1292 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum scarecrow-like protein 6 (LOC108483812), mRNA	scarecrow-like protein 6(LOC108483812)	coding protein	psRNATarget
XM_017781711.1	ncRNA:21   CUAUAACCGUGCCGAGUUAGU   1   |||||||||=||||||||||| targets:1378   GAUAUUGGCGCGGCUCAAUCA   1398 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum scarecrow-like protein 6 (LOC108479238), mRNA	scarecrow-like protein 6(LOC108479238)	coding protein	psRNATarget
XM_017768217.1	ncRNA:21   CUAUAACCGUGCCGAGUUAGU   1   |||||||||=||||||||||| targets:1732   GAUAUUGGCGCGGCUCAAUCA   1752 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum scarecrow-like protein 27 (LOC108467555), mRNA	scarecrow-like protein 27(LOC108467555)	coding protein	psRNATarget
XM_017782902.1	ncRNA:21   CUAUAACCGUGCCGAGUUAGU   1   |||||||||=||||||||||| targets:1782   GAUAUUGGCGCGGCUCAAUCA   1802 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum scarecrow-like protein 22 (LOC108480007), transcript variant X2, mRNA	scarecrow-like protein 22(LOC108480007)	coding protein	psRNATarget
XM_017782901.1	ncRNA:21   CUAUAACCGUGCCGAGUUAGU   1   |||||||||=||||||||||| targets:1802   GAUAUUGGCGCGGCUCAAUCA   1822 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum scarecrow-like protein 22 (LOC108480007), transcript variant X1, mRNA	scarecrow-like protein 22(LOC108480007)	coding protein	psRNATarget