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BaseInfo

ncRNA ID novel_gar_miR438
Species Gossypium arboreum
Class miRNA
Genome position Chr1:136053845-136054034 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029588
Length 24
Mature sequence(if miRNA) 1 - AAUGAACAAGGGAGGAAAACUGAG - 24
Stem-loop(if miRNA) --UU       -     C             A A  A         A                        CU UA   UUA  U      C  UU
    GUUUUCC CCCUU UUCAUUUCUUUUA C UA UUUUUCUAU UUUUUCAUUUGUUAAAAUUAGUCC  A  CUU   UU UUUGAA AA  U
    ||||||| ||||| ||||||||||||| | || ||||||||| ||||||||||||||||||||||||  |  |||   || |||||| ||
    CAAAAGG GGGAA AAGUAAAGAAAAU G AU AAAAAGAUA AAAAAGUAAACAAUUUUGAUCAGG  U  GAG   AG GAGCUU UU  A
GAGU       A     C             C C  C         C                        -U UC   CGG  U      U  UA
Stem-loop sequence UUGUUUUCCCCCUUCUUCAUUUCUUUUAACAUAAUUUUUCUAUAUUUUUCAUUUGUUAAAAUUAGUCCCUAUACUUUUAUUUUUUGAACAAUUUAAUUUUUUCGAGUGAGGCGAGCUUUGGACUAGUUUUAACAAAUGAAAAACAUAGAAAAACUACGCUAAAAGAAAUGAACAAGGGAGGAAAACUGAG