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BaseInfo

ncRNA ID novel_gar_miR436
Species Gossypium arboreum
Class miRNA
Genome position Chr11:73855586-73855673 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029588
Length 24
Mature sequence(if miRNA) 65 - AUGUGUCUCUGAACUCAAGAGCAA - 88
Stem-loop(if miRNA) --    G    ---        U    ----    ACAUAAGUUUCAU
  GCUU UUGA   CAGAGAUA CAUC    CGCG             U
  |||| ||||   |||||||| ||||    ||||             U
  CGAG AACU   GUCUCUGU GUAG    GCGC             A
AA    -    CAA        -    CUUC    AAUUACUUCCAUG
Stem-loop sequence GCUUGUUGACAGAGAUAUCAUCCGCGACAUAAGUUUCAUUUAGUACCUUCAUUAACGCGCUUCGAUGUGUCUCUGAACUCAAGAGCAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017748988.1
ncRNA:24   AACGAGAACUCAAGUCUCUGUGUA   1
  ||||||||||||||=|||||||||
targets:670   UUGCUCUUGAGUUCGGAGACACAU   693

1.5 PREDICTED: Gossypium arboreum uncharacterized LOC108451283 (LOC108451283), mRNA uncharacterized LOC108451283(LOC108451283) coding protein psRNATarget
XM_017749298.1
ncRNA:24   AACGAGAACUCAAGUCUCUGUGUA   1
  ||||||||||||||=|||||||||
targets:280   UUGCUCUUGAGUUCGGAGACACAU   303

1.5 PREDICTED: Gossypium arboreum uncharacterized LOC108451631 (LOC108451631), mRNA uncharacterized LOC108451631(LOC108451631) coding protein psRNATarget