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BaseInfo

ncRNA ID novel_gar_miR424
Species Gossypium arboreum
Class miRNA
Genome position Chr13:48610910-48610992 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029586;SRR1029588;SRR3180715;SRR3180719;SRR3180720;SRR3180721;SRR959750;SRR1029587
Length 21
Mature sequence(if miRNA) 1 - UGACAGAAGAGAGUGAGCACU - 21
Stem-loop(if miRNA) --U           -       CU   A  C  UU      A
   GACAGAAGAGA GUGAGCA  CAC GG AA  GUAUGC A
   ||||||||||| |||||||  ||| || ||  |||||| A
   CUGUCUUCUCU CAUUCGU  GUG CC UU  CAUACG A
CGG           U       UG   -  U  UC      G
Stem-loop sequence UGACAGAAGAGAGUGAGCACUCACAGGCAAUUGUAUGCAAAAGGCAUACCUUUUCCGUGGUUGCUUACUUCUCUUCUGUCGGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017750004.1
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:682   CGUGCUCUCUCUCUUCUGUCA   702

1.0 PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 7 (LOC108452234), mRNA squamosa promoter-binding-like protein 7(LOC108452234) coding protein psRNATarget
XM_017775135.1
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:870   UGUGCUCUCUCUCUUCUGUCA   890

1.0 PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 17 (LOC108473521), mRNA squamosa promoter-binding-like protein 17(LOC108473521) coding protein psRNATarget
XM_017781546.1
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:931   CGUGCUCUCUCUCUUCUGUCA   951

1.0 PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 16 (LOC108479128), transcript variant X3, mRNA squamosa promoter-binding-like protein 16(LOC108479128) coding protein psRNATarget
XM_017768226.1
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:1013   CGUGCUCUCUCUCUUCUGUCA   1033

1.0 PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 16 (LOC108467559), transcript variant X5, mRNA squamosa promoter-binding-like protein 16(LOC108467559) coding protein psRNATarget
XM_017768227.1
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:1016   CGUGCUCUCUCUCUUCUGUCA   1036

1.0 PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 16 (LOC108467559), transcript variant X6, mRNA squamosa promoter-binding-like protein 16(LOC108467559) coding protein psRNATarget
XM_017783987.1
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:923   UGUGCUCUCUCUCUUCUGUCA   943

1.0 PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 9 (LOC108480862), mRNA squamosa promoter-binding-like protein 9(LOC108480862) coding protein psRNATarget
XM_017769069.1
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:1113   CGUGCUCUCUCUCUUCUGUCA   1133

1.0 PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 16 (LOC108468186), transcript variant X3, mRNA squamosa promoter-binding-like protein 16(LOC108468186) coding protein psRNATarget
XM_017768224.1
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:1051   CGUGCUCUCUCUCUUCUGUCA   1071

1.0 PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 16 (LOC108467559), transcript variant X3, mRNA squamosa promoter-binding-like protein 16(LOC108467559) coding protein psRNATarget
XM_017758701.1
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:911   CGUGCUCUCUCUCUUCUGUCA   931

1.0 PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 7 (LOC108459343), transcript variant X2, mRNA squamosa promoter-binding-like protein 7(LOC108459343) coding protein psRNATarget
XM_017781544.1
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:1105   CGUGCUCUCUCUCUUCUGUCA   1125

1.0 PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 16 (LOC108479128), transcript variant X1, mRNA squamosa promoter-binding-like protein 16(LOC108479128) coding protein psRNATarget
XM_017768223.1
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:1110   CGUGCUCUCUCUCUUCUGUCA   1130

1.0 PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 16 (LOC108467559), transcript variant X2, mRNA squamosa promoter-binding-like protein 16(LOC108467559) coding protein psRNATarget
XM_017758700.1
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:956   CGUGCUCUCUCUCUUCUGUCA   976

1.0 PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 7 (LOC108459343), transcript variant X1, mRNA squamosa promoter-binding-like protein 7(LOC108459343) coding protein psRNATarget
XM_017769068.1
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:1203   CGUGCUCUCUCUCUUCUGUCA   1223

1.0 PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 16 (LOC108468186), transcript variant X2, mRNA squamosa promoter-binding-like protein 16(LOC108468186) coding protein psRNATarget
XM_017769067.1
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:1212   CGUGCUCUCUCUCUUCUGUCA   1232

1.0 PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 16 (LOC108468186), transcript variant X1, mRNA squamosa promoter-binding-like protein 16(LOC108468186) coding protein psRNATarget
XM_017779909.1
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:1134   UGUGCUCUCUCUCUUCUGUCA   1154

1.0 PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 13A (LOC108477384), mRNA squamosa promoter-binding-like protein 13A(LOC108477384) coding protein psRNATarget
XM_017765900.1
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:914   UGUGCUCUCUCUCUUCUGUCA   934

1.0 PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 9 (LOC108465551), mRNA squamosa promoter-binding-like protein 9(LOC108465551) coding protein psRNATarget
XM_017785312.1
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:890   UGUGCUCUCUCUCUUCUGUCA   910

1.0 PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 6 (LOC108482194), mRNA squamosa promoter-binding-like protein 6(LOC108482194) coding protein psRNATarget
XM_017781545.1
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:1220   CGUGCUCUCUCUCUUCUGUCA   1240

1.0 PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 16 (LOC108479128), transcript variant X2, mRNA squamosa promoter-binding-like protein 16(LOC108479128) coding protein psRNATarget
XM_017756867.1
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:1500   CGUGCUCUCUCUCUUCUGUCA   1520

1.0 PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 2 (LOC108457744), transcript variant X5, mRNA squamosa promoter-binding-like protein 2(LOC108457744) coding protein psRNATarget
XM_017778559.1
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:1396   CGUGCUCUCUCUCUUCUGUCA   1416

1.0 PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 2 (LOC108476362), transcript variant X1, mRNA squamosa promoter-binding-like protein 2(LOC108476362) coding protein psRNATarget
XM_017760108.1
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:1454   CGUGCUCUCUCUCUUCUGUCA   1474

1.0 PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 2 (LOC108460571), transcript variant X5, mRNA squamosa promoter-binding-like protein 2(LOC108460571) coding protein psRNATarget
XM_017760107.1
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:1497   CGUGCUCUCUCUCUUCUGUCA   1517

1.0 PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 2 (LOC108460571), transcript variant X4, mRNA squamosa promoter-binding-like protein 2(LOC108460571) coding protein psRNATarget
XM_017761788.1
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:1317   UGUGCUCUCUCUCUUCUGUCA   1337

1.0 PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 6 (LOC108461834), mRNA squamosa promoter-binding-like protein 6(LOC108461834) coding protein psRNATarget
XM_017760109.1
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:1620   CGUGCUCUCUCUCUUCUGUCA   1640

1.0 PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 2 (LOC108460571), transcript variant X6, mRNA squamosa promoter-binding-like protein 2(LOC108460571) coding protein psRNATarget
XM_017756866.1
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:1914   CGUGCUCUCUCUCUUCUGUCA   1934

1.0 PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 2 (LOC108457744), transcript variant X4, mRNA squamosa promoter-binding-like protein 2(LOC108457744) coding protein psRNATarget
XM_017768222.1
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:1876   CGUGCUCUCUCUCUUCUGUCA   1896

1.0 PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 16 (LOC108467559), transcript variant X1, mRNA squamosa promoter-binding-like protein 16(LOC108467559) coding protein psRNATarget
XM_017760106.1
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:1767   CGUGCUCUCUCUCUUCUGUCA   1787

1.0 PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 2 (LOC108460571), transcript variant X3, mRNA squamosa promoter-binding-like protein 2(LOC108460571) coding protein psRNATarget
XM_017768225.1
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:1916   CGUGCUCUCUCUCUUCUGUCA   1936

1.0 PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 16 (LOC108467559), transcript variant X4, mRNA squamosa promoter-binding-like protein 16(LOC108467559) coding protein psRNATarget
XM_017783067.1
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:1748   UGUGCUCUCUCUCUUCUGUCA   1768

1.0 PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 6 (LOC108480171), transcript variant X1, mRNA squamosa promoter-binding-like protein 6(LOC108480171) coding protein psRNATarget
XM_017760103.1
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:1889   CGUGCUCUCUCUCUUCUGUCA   1909

1.0 PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 2 (LOC108460571), transcript variant X1, mRNA squamosa promoter-binding-like protein 2(LOC108460571) coding protein psRNATarget
XM_017783069.1
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:1927   UGUGCUCUCUCUCUUCUGUCA   1947

1.0 PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 6 (LOC108480171), transcript variant X3, mRNA squamosa promoter-binding-like protein 6(LOC108480171) coding protein psRNATarget
XM_017783068.1
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:2032   UGUGCUCUCUCUCUUCUGUCA   2052

1.0 PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 6 (LOC108480171), transcript variant X2, mRNA squamosa promoter-binding-like protein 6(LOC108480171) coding protein psRNATarget
XM_017756864.1
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:2448   CGUGCUCUCUCUCUUCUGUCA   2468

1.0 PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 2 (LOC108457744), transcript variant X2, mRNA squamosa promoter-binding-like protein 2(LOC108457744) coding protein psRNATarget
XM_017760104.1
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:2221   CGUGCUCUCUCUCUUCUGUCA   2241

1.0 PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 2 (LOC108460571), transcript variant X2, mRNA squamosa promoter-binding-like protein 2(LOC108460571) coding protein psRNATarget
XM_017756863.1
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:2505   CGUGCUCUCUCUCUUCUGUCA   2525

1.0 PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 2 (LOC108457744), transcript variant X1, mRNA squamosa promoter-binding-like protein 2(LOC108457744) coding protein psRNATarget
XM_017756865.1
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:2607   CGUGCUCUCUCUCUUCUGUCA   2627

1.0 PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 2 (LOC108457744), transcript variant X3, mRNA squamosa promoter-binding-like protein 2(LOC108457744) coding protein psRNATarget
XM_017756868.1
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:2617   CGUGCUCUCUCUCUUCUGUCA   2637

1.0 PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 2 (LOC108457744), transcript variant X6, mRNA squamosa promoter-binding-like protein 2(LOC108457744) coding protein psRNATarget
XM_017778560.1
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:2803   CGUGCUCUCUCUCUUCUGUCA   2823

1.0 PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 2 (LOC108476362), transcript variant X2, mRNA squamosa promoter-binding-like protein 2(LOC108476362) coding protein psRNATarget
XM_017792853.1
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  **|||||*|||||||||||||
targets:821   UAUGCUCUCUCUCUUCUGUCA   841

1.0 PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 13A (LOC108488561), mRNA squamosa promoter-binding-like protein 13A(LOC108488561) coding protein psRNATarget
XM_017783577.1
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  |**||||*|||||||||||||
targets:847   AACGCUCCCUCUCUUCUGUCA   867

2.0 PREDICTED: Gossypium arboreum squamosa promoter-binding protein 1 (LOC108480540), mRNA squamosa promoter-binding protein 1(LOC108480540) coding protein psRNATarget
XM_017763172.1
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  ***||||*|||||||||||||
targets:721   UACGCUCCCUCUCUUCUGUCA   741

2.0 PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 3 (LOC108463231), mRNA squamosa promoter-binding-like protein 3(LOC108463231) coding protein psRNATarget
XM_017779527.1
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  **|*=|||||||||||||||*
targets:176   UCUUUUCACUCUCUUCUGUCC   196

3.0 PREDICTED: Gossypium arboreum bidirectional sugar transporter SWEET7 (LOC108477084), transcript variant X2, mRNA bidirectional sugar transporter SWEET7(LOC108477084) coding protein psRNATarget
XM_017779526.1
ncRNA:21   UCACGAGUGAGAGAAGACAGU   1
  **|*=|||||||||||||||*
targets:176   UCUUUUCACUCUCUUCUGUCC   196

3.0 PREDICTED: Gossypium arboreum bidirectional sugar transporter SWEET7 (LOC108477084), transcript variant X1, mRNA bidirectional sugar transporter SWEET7(LOC108477084) coding protein psRNATarget
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